WormBase Tree Display for Sequence: Y105C5A
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| Y105C5A | DNA | Y105C5A | 314838 | ||
|---|---|---|---|---|---|
| SMap | S_child (13) | ||||
| Structure | From | Source | CHROMOSOME_IV | ||
| Overlap_right | Y105C5B | 314735 | |||
| Overlap_left | Y73F8A | ||||
| Clone_left_end | Y105C5 | 1 | |||
| Y105C5A | 1 | ||||
| Clone_right_end | Y105C5A | 314838 | |||
| DB_info | Database | EMBL | NDB_AC | AL117193 | |
| NDB_SV | AL117193.3 | ||||
| Secondary_accession | Z98855 | ||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 200756 | ||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | McMurray AA | |||
| From_laboratory | HX | ||||
| Date_directory | 000321 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | Y105C5A | |||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | 3ef7e1c026103ffb2f610f30676d1bc1 | |||
| Status | Shotgun | 23 Jul 1997 00:00:00 | |||
| Finished | 21 May 1999 00:00:00 | ||||
| Submitted | 21 May 1999 00:00:00 | ||||
| Annotated | 21 Oct 1999 00:00:00 | ||||
| Map | Sequence-IV | Ends | Left | 7703 | |
| Right | 7783 | ||||
| Interpolated_map_position | IV | 14.2887 | |||
| Assembly_tags | Finished Left | 314735 | 314738 | Y105C5B | |
| 1 | 5 | Y105C5A | |||
| Finished Right | 314835 | 314838 | Y105C5A | ||
| annotation | 61078 | 61120 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat region | ||
| 87165 | 87847 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - size not determined | |||
| 143720 | 143814 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone coverage in inverted repeat region | |||
| 164891 | 164955 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat region | |||
| 189613 | 192230 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Orientation of the inverted repeat loop is not confirmed. | |||
| 218893 | 219180 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - small insert library to close inverted repeat region | |||
| 219802 | 219875 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - small insert library from single clone in inverted repeat region | |||
| 229139 | 229238 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat region | |||
| 304219 | 304253 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - small insert library from single clone in inverted repeat region | |||
| 304868 | 304908 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 312773 | 312881 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 1 | 16 | ERROR 1st 16bp are erroneous.....1st 16bp of this clone were added to this clone and submitted to EMBL/NDB, in 2006 the rational for this is unknown?...all data has been altered to stay in concordance with the original NDB submission. | |||
| Clone left end | 1 | 5 | Y105C5 | ||
| Method | Genomic_canonical |
