WormBase Tree Display for Sequence: Y105C5B
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| Y105C5B | DNA | Y105C5B | 321305 | ||
|---|---|---|---|---|---|
| SMap | S_child (13) | ||||
| Structure | From | Source | CHROMOSOME_IV | ||
| Overlap_right | Y7A9A | 321205 | |||
| Overlap_left | Y105C5A | ||||
| Clone_left_end | C26C6 | 321205 | |||
| Y105C5B | 1 | ||||
| Clone_right_end | Y105C5B | 321305 | |||
| DB_info | Database | EMBL | NDB_AC | AL110479 | |
| NDB_SV | AL110479.3 | ||||
| Secondary_accession | Z98855 | ||||
| DB_remark | [100415] Sequence correction: insertion 1 bases tgctctattGggctcctg @ 101874 | ||||
| [121025] Sequence correction: SNP 0 bases @ 7369 | |||||
| [121025] Sequence correction: SNP 0 bases @ 61711 | |||||
| [121025] Sequence correction: SNP 0 bases @ 72137 | |||||
| [121025] Sequence correction: SNP 0 bases @ 221937 | |||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | McMurray AA | |||
| From_laboratory | HX | ||||
| Date_directory | 100415 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | Y105C5B | |||
| Remark | [021022 ar2] Removed a spurious confirimed intron that had no supporting transcript data (80458 - 80094) | ||||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | 70bd15c8bd946161df19608b204f2117 | |||
| Status | Finished | 21 May 1999 00:00:00 | |||
| Submitted | 21 May 1999 00:00:00 | ||||
| Annotated | 27 Oct 1999 00:00:00 | ||||
| Map | Sequence-IV | Ends | Left | 7780 | |
| Right | 7834 | ||||
| Interpolated_map_position | IV | 14.5393 | |||
| Assembly_tags | Finished Right | 101 | 104 | Y105C5A | |
| 321302 | 321305 | Y105C5B | |||
| Finished Left | 1 | 4 | Y105C5B | ||
| annotation | 8566 | 8617 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | ||
| 57495 | 57574 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat region | |||
| 87537 | 87640 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | |||
| 87720 | 87779 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -sequenced with Dye Primer chemistrydue to inverted repeat region. Could notbe sequenced with dye terminatorchemistry | |||
| 235995 | 243858 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -Inverted repeat region. Inverted repeatelements are too long to allow theorientation of the loop to be determinedby matching fwd and rev reads acrossthem. PCR across the repeat elementssuggests that this is the likelyorientation of the loop. | |||
| Clone left end | 321205 | 321210 | Y7A9 | ||
| Method | Genomic_canonical |
