WormBase Tree Display for Variation: WBVar01466229
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| WBVar01466229 | Evidence | Paper_evidence | WBPaper00040707 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01466229 | ||||
| Other_name | Y116F11B.3.2:c.2465G>C | |||||
| CE26048:p.Gly822Ala | ||||||
| Y116F11B.3.1:c.2465G>C | ||||||
| HGVSg | CHROMOSOME_V:g.19824474C>G | |||||
| Sequence_details | SMap | S_parent | Sequence | Y116F11B | ||
| Flanking_sequences | TTATTACCCATCCCGGTATAAGTGCCTCCT | CGTTGTTAAATGACGTCATATAGGCATTAA | ||||
| Mapping_target | Y116F11B | |||||
| Type_of_mutation | Substitution | c | g | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00005299 | From_analysis | WGS_Andersen | |||
| WBStrain00005300 | From_analysis | WGS_Andersen | ||||
| WBStrain00005301 | From_analysis | WGS_Andersen | ||||
| WBStrain00005307 | From_analysis | WGS_Andersen | ||||
| WBStrain00005311 | From_analysis | WGS_Andersen | ||||
| WBStrain00022886 | From_analysis | WGS_Andersen | ||||
| Million_mutation_project_reanalysis | ||||||
| WBStrain00022888 | From_analysis | WGS_Andersen | ||||
| WBStrain00022889 | From_analysis | WGS_Andersen | ||||
| WBStrain00022894 | From_analysis | WGS_Andersen | ||||
| WBStrain00022898 | From_analysis | WGS_Andersen | ||||
| WBStrain00023065 | From_analysis | WGS_Andersen | ||||
| WBStrain00023072 | From_analysis | WGS_Andersen | ||||
| Million_mutation_project_reanalysis | ||||||
| WBStrain00023085 | From_analysis | WGS_Andersen | ||||
| WBStrain00023139 | From_analysis | WGS_Andersen | ||||
| Million_mutation_project_reanalysis | ||||||
| WBStrain00023208 | From_analysis | WGS_Andersen | ||||
| WBStrain00023279 | From_analysis | WGS_Andersen | ||||
| WBStrain00027648 | From_analysis | WGS_Andersen | ||||
| Million_mutation_project_reanalysis | ||||||
| WBStrain00027660 | From_analysis | WGS_Andersen | ||||
| Million_mutation_project_reanalysis | ||||||
| WBStrain00027661 | From_analysis | WGS_Andersen | ||||
| WBStrain00027662 | From_analysis | WGS_Andersen | ||||
| Million_mutation_project_reanalysis | ||||||
| WBStrain00027669 | From_analysis | WGS_Andersen | ||||
| Laboratory | QX | |||||
| Person | WBPerson1730 | |||||
| Analysis | WGS_Andersen | |||||
| DB_info | Database | dbSNP_rs | rs | 193351841 | ||
| dbSNP_ss | ss | 295527760 | ||||
| Status | Live | |||||
| Affects | Gene | WBGene00003959 | ||||
| Transcript | Y116F11B.3.2 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| SIFT | 0.01 | deleterious | ||||
| PolyPhen | 0.244 | benign | ||||
| HGVSc | Y116F11B.3.2:c.2465G>C | |||||
| HGVSp | CE26048:p.Gly822Ala | |||||
| cDNA_position | 2509 | |||||
| CDS_position | 2465 | |||||
| Protein_position | 822 | |||||
| Exon_number | 7/9 | |||||
| Codon_change | gGa/gCa | |||||
| Amino_acid_change | G/A | |||||
| Y116F11B.3.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| SIFT | 0.01 | deleterious | ||||
| PolyPhen | 0.244 | benign | ||||
| HGVSc | Y116F11B.3.1:c.2465G>C | |||||
| HGVSp | CE26048:p.Gly822Ala | |||||
| cDNA_position | 2474 | |||||
| CDS_position | 2465 | |||||
| Protein_position | 822 | |||||
| Exon_number | 6/8 | |||||
| Codon_change | gGa/gCa | |||||
| Amino_acid_change | G/A | |||||
| Reference | WBPaper00040707 | |||||
| Method | WGS_Andersen |
