WormBase Tree Display for Variation: WBVar01253879
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| WBVar01253879 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01253879 | |||||
| Other_name | cewivar00328943 | ||||||
| CE38092:p.Leu1258Phe | |||||||
| R05H10.6.1:c.3774A>T | |||||||
| HGVSg | CHROMOSOME_II:g.14850114A>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | R05H10 | |||
| Flanking_sequences | CTTATGACCTCAGAGGACCCAAGATCAGACACTCTGATCCAGCCGGAATT | TTTTTCATGGTACTAGGCTTCCTAGTCCTGTTGGCAATTACTCTCGCACT | |||||
| Mapping_target | R05H10 | ||||||
| Type_of_mutation | Substitution | a | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006631 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539090436 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00000399 | |||||
| Transcript | R05H10.6.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | ||||||
| SIFT | 0.2 | tolerated | |||||
| PolyPhen | 0.993 | probably_damaging | |||||
| HGVSc | R05H10.6.1:c.3774A>T | ||||||
| HGVSp | CE38092:p.Leu1258Phe | ||||||
| cDNA_position | 3873 | ||||||
| CDS_position | 3774 | ||||||
| Protein_position | 1258 | ||||||
| Exon_number | 10/12 | ||||||
| Codon_change | ttA/ttT | ||||||
| Amino_acid_change | L/F | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
