WormBase Tree Display for Variation: WBVar00198097
expand all nodes | collapse all nodes | view schema
WBVar00198097 | Evidence | Paper_evidence | WBPaper00038208 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00198097 | ||||
Other_name | haw65373 | |||||
haw158068 | ||||||
cewivar00216220 | ||||||
Y105C5B.15a.1:c.547C>A | ||||||
CE24064:p.Pro183Thr | ||||||
CE50083:p.Pro130Thr | ||||||
Y105C5B.15b.1:c.388C>A | ||||||
HGVSg | CHROMOSOME_IV:g.15953402C>A | |||||
Sequence_details | SMap | S_parent | Sequence | Y105C5B | ||
Flanking_sequences | agatgactatatgaatgcagttcag | catttgctgcgtatgttccttatat | ||||
Mapping_target | Y105C5B | |||||
Type_of_mutation | Substitution | C | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | ||||
Laboratory | RW | |||||
Person | WBPerson1562 | |||||
WBPerson4037 | ||||||
Analysis | WGS_Hawaiian_Waterston | |||||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
History | Acquires_merge | WBVar00577933 | ||||
Status | Live | |||||
Affects | Gene | WBGene00013654 | ||||
Transcript | Y105C5B.15b.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.01 | deleterious | ||||
PolyPhen | 0.993 | probably_damaging | ||||
HGVSc | Y105C5B.15b.1:c.388C>A | |||||
HGVSp | CE50083:p.Pro130Thr | |||||
cDNA_position | 388 | |||||
CDS_position | 388 | |||||
Protein_position | 130 | |||||
Exon_number | 2/4 | |||||
Codon_change | Cca/Aca | |||||
Amino_acid_change | P/T | |||||
Y105C5B.15a.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.01 | deleterious | ||||
PolyPhen | 0.993 | probably_damaging | ||||
HGVSc | Y105C5B.15a.1:c.547C>A | |||||
HGVSp | CE24064:p.Pro183Thr | |||||
cDNA_position | 553 | |||||
CDS_position | 547 | |||||
Protein_position | 183 | |||||
Exon_number | 4/7 | |||||
Codon_change | Cca/Aca | |||||
Amino_acid_change | P/T | |||||
Reference | WBPaper00038208 | |||||
Remark | [20081124 db] this Variation was previously named hw65373 | |||||
Method | WGS_Hawaiian_Waterston |