WormBase Tree Display for Variation: WBVar00145628

WBVar00145628 Name: Public_name: gk221
    HGVSg: CHROMOSOME_V:g.9707259_9709310del
  Sequence_details: SMap: S_parent: Sequence: F40F9
    Flanking_sequences: GTAACATTGTGCCAATTTAAATGAATGTGTATTATCGAAAAAATACGATC AACCAAAAGTTTGCTTAAACACGTGAAAACTCGGAATTTAGGAGAAACTT
    Mapping_target: F40F9
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035757
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live: Curator_confirmed: WBPerson4025
  Affects: Gene: WBGene00006470
      WBGene00009580
    Transcript: F40F9.1a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 7/8
        Exon_number: 8-9/9
      F40F9.1a.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 8/9
        Exon_number: 9-10/10
      F40F9.1b.3 VEP_consequence: splice_acceptor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 8/8
        Exon_number: 9/9
      F40F9.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-5/6
        Exon_number: 3-7/7
      F40F9.1b.1 VEP_consequence: splice_acceptor_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 9/9
        Exon_number: 10/10
      F40F9.1b.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1060-?
        Exon_number: 9/9
  Isolation: Mutagen: TMP/UV
  Genetics: Mapping_data: In_multi_point: 5142
  Remark: This was suppressed because it overlapped with a corrected genome sequence error feature Feature_evidence: WBsf898404
    This was un-suppressed after examination showed it is not changed by the corrected genome sequence error Curator_confirmed: WBPerson4025
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele