WormBase Tree Display for Variation: WBVar00143988
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| WBVar00143988 | Evidence | Paper_evidence | WBPaper00002436 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | e1413 | |||||
| Other_name | Y54G11A.10b.1:c.40C>T | ||||||
| Y54G11A.10a.1:c.40C>T | |||||||
| CE43616:p.Gln14Ter | |||||||
| CE43589:p.Gln14Ter | |||||||
| HGVSg | CHROMOSOME_II:g.14348753G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y54G11A | |||
| Flanking_sequences | ccggatggtccgaatttggagcgggacgtt | agcgtattctagagctcatggagcacgttc | |||||
| Mapping_target | Y54G11A | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002436 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00004327 | ||||||
| WBStrain00004774 | |||||||
| WBStrain00005495 | |||||||
| Laboratory | CB | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00002996 | |||||
| Transcript | Y54G11A.10b.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y54G11A.10b.1:c.40C>T | ||||||
| HGVSp | CE43616:p.Gln14Ter | ||||||
| cDNA_position | 364 | ||||||
| CDS_position | 40 | ||||||
| Protein_position | 14 | ||||||
| Exon_number | 3/6 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Y54G11A.10a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y54G11A.10a.1:c.40C>T | ||||||
| HGVSp | CE43589:p.Gln14Ter | ||||||
| cDNA_position | 40 | ||||||
| CDS_position | 40 | ||||||
| Protein_position | 14 | ||||||
| Exon_number | 1/5 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor | WBInteraction000000344 | ||||||
| WBInteraction000501565 | |||||||
| Genetics | Interpolated_map_position | II | 22.9071 | ||||
| Mapping_data | In_2_point | 493 | |||||
| 4226 | |||||||
| 4227 | |||||||
| 5206 | |||||||
| 5209 | |||||||
| 5210 | |||||||
| In_multi_point | 413 | ||||||
| 1396 | |||||||
| 1675 | |||||||
| 1833 | |||||||
| 1834 | |||||||
| Description (2) | |||||||
| Reference | WBPaper00001039 | ||||||
| WBPaper00014218 | |||||||
| WBPaper00000762 | |||||||
| WBPaper00002375 | |||||||
| WBPaper00011626 | |||||||
| WBPaper00013667 | |||||||
| WBPaper00015978 | |||||||
| WBPaper00014517 | |||||||
| WBPaper00023121 | |||||||
| WBPaper00013920 | |||||||
| Method | Substitution_allele |
