Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00142960

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00142960EvidencePerson_evidenceWBPerson21026
NamePublic_namee101
Other_nameR12H7.1a.2:c.1039-1G>A
R12H7.1a.1:c.1039-1G>A
R12H7.1b.1:c.847-1G>A
HGVSgCHROMOSOME_X:g.13215704G>A
Sequence_detailsSMapS_parentSequenceR12H7
Flanking_sequencesttacactgaccgaaattaaaccccatttcagatggtgttttcctacttcgtatggttgca
Mapping_targetR12H7
Type_of_mutationSubstitutiongaPerson_evidenceWBPerson21026
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004099
WBStrain00027005
WBStrain00027143
WBStrain00034124
WBStrain00034336
WBStrain00034605
WBStrain00035117
WBStrain00035118
WBStrain00035119
WBStrain00035120
WBStrain00035121
WBStrain00035122
WBStrain00035123
WBStrain00035124
WBStrain00035125
WBStrain00056101
WBStrain00056104
WBStrain00056127
WBStrain00056155
LaboratoryCB
OJ
StatusLive
AffectsGeneWBGene00006749
TranscriptR12H7.1a.2VEP_consequencesplice_acceptor_variant
VEP_impactHIGH
HGVScR12H7.1a.2:c.1039-1G>A
Intron_number9/10
R12H7.1a.1VEP_consequencesplice_acceptor_variant
VEP_impactHIGH
HGVScR12H7.1a.1:c.1039-1G>A
Intron_number8/9
R12H7.1b.1VEP_consequencesplice_acceptor_variant
VEP_impactHIGH
HGVScR12H7.1b.1:c.847-1G>A
Intron_number5/5
InteractorWBInteraction000052321
WBInteraction000052323
WBInteraction000052325
WBInteraction000518927
WBInteraction000518931
IsolationMutagenEMS
GeneticsInterpolated_map_positionX10.3258
Mapping_dataIn_2_point179
189
190
419
3666
3914
5007
6063
6105
6123
6161
In_multi_point426
442
445
617
620
735
751
1325
1326
1352
1436
1437
1438
1562
1563
1564
1738
1742
1770
1774
1776
2060
2062
2063
2064
2168
2171
2292
2411
3080
3085
3086
3089
3091
3093
In_pos_neg_data944
1853
1878
1895
1903
1918
1934
1950
1966
1982
1998
2005
2014
2030
2046
2185
2240
2258
5507
DescriptionPhenotypeWBPhenotype:0000002Person_evidenceWBPerson21026
Curator_confirmedWBPerson712
WBPhenotype:0000164Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000324Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000543Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkMoves backward better than forward slight kinker in forward movement.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES2_Difficult_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000641Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkActive, healthy.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000643Paper_evidenceWBPaper00000031
WBPaper00000958
Curator_confirmedWBPerson48
WBPerson712
WBPhenotype:0000847Paper_evidenceWBPaper00033075
Curator_confirmedWBPerson2021
Remarkunc-9 is required for the even distribution of GFP::SYD-2 and UNC-10 active zone markersPaper_evidenceWBPaper00033075
Curator_confirmedWBPerson2021
WBPhenotype:0001364Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkMale fan slightly reduced.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001522Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkMale spicules tend to protrude.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001639Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001716Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002284Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002288Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002292Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002295Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002300Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002301Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002310Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002312Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002323Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002335Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002344Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002347Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002348Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004022Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0001611Paper_evidenceWBPaper00000958
Curator_confirmedWBPerson712
RemarkAnimals exhibit normal halothane sensitivity.Paper_evidenceWBPaper00000958
Curator_confirmedWBPerson712
WBPhenotype:0001612Paper_evidenceWBPaper00002358
Curator_confirmedWBPerson712
RemarkAnimals have a similar EC50 (1020 30mM) compared to N2 (1050 25 mM).Paper_evidenceWBPaper00002358
Curator_confirmedWBPerson712
Phenotype_assayTreatment50 animals were scored for mobility for 10 sec. at each concentration of ethanol after 5 min exposure. EC50's (concentration at which 50% of the animals were immobile for >10 sec) were determined from a dose response curve over a minimum of 12 concentrations (mM). Immobility was used an as endpoint. Upon removal from ethanol, immobility was reversible within 10-15 min. Treatment and scoring of anesthetic responses are described in Sedensky and Meneely, 1987; Morgan et al. , 1990; Morgan and Sedensky, 1994.Paper_evidenceWBPaper00002358
Curator_confirmedWBPerson712
Temperature22-24CPaper_evidenceWBPaper00002358
Curator_confirmedWBPerson712
ReferenceWBPaper00043908
WBPaper00013842
WBPaper00000031
WBPaper00000958
WBPaper00016500
WBPaper00002358
WBPaper00025689
WBPaper00033075
WBPaper00065757
MethodSubstitution_allele