WormBase Tree Display for Variation: WBVar00111585

WBVar00111585 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00111585
    Other_name: cbs47106
    HGVSg: chrV:g.7246470A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0156
    Flanking_sequences: ttccggattccggaaaatttgcatttgtccgtatttcggattccgacaaa ttttttattgcggatttcaagcatatttgaaaatttgcaagaattctctg
    Mapping_target: cb25.fpc0156
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 566 434
        TCCGGA AccIII, BseAI, BsiMI, Bsp13I, BspEI, BspMII, Kpn2I, MroI 404 271 181 52 40 21 17 7 7
        CCGC AciI 476 436 88
        RAATTY AcsI, ApoI, XapI 421 294 165 43 34 33 10
        CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 919 81
        CCSGG AsuC2I, BcnI, CauII, EcoHI, NciI 1000
        WCCGGW BetI, BsaWI 403 271 181 45 40 21 17 7 7 7 1
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 1000
        RGCY CviJI, CviTI 657 214 108 21
        GAATTC EcoRI, FunII 421 294 165 120
        CAC HindI 192 161 141 91 81 76 47 43 25 23 21 18 18 15 11 10 9 9 4 3 2
        TCNNGA Hpy178III, Hpy188III 289 256 181 101 52 34 17 15 14 14 7 7 7 6
        TCNGA Hpy188I 246 241 192 156 56 56 40 7 6
        GTNAC MaeIII 1000
        GTSAC NmuCI, Tsp45I 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 178 153 149 121 79 50 44 43 40 39 34 33 16 11 10
      Polymorphic_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 1000
        TCCGGA AccIII, BseAI, BsiMI, Bsp13I, BspEI, BspMII, Kpn2I, MroI 404 271 181 52 40 38 7 7
        CCGC AciI 912 88
        RAATTY AcsI, ApoI, XapI 459 421 43 34 33 10
        CYCGRG Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII 710 209 81
        CCSGG AsuC2I, BcnI, CauII, EcoHI, NciI 662 338
        WCCGGW BetI, BsaWI 403 271 181 45 40 38 7 7 7 1
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 662 338
        RGCY CviJI, CviTI 335 322 214 108 21
        GAATTC EcoRI, FunII 459 421 120
        CAC HindI 192 141 138 91 81 76 47 43 25 23 23 21 18 18 15 11 10 9 9 4 3 2
        TCNNGA Hpy178III, Hpy188III 289 256 181 101 52 34 24 15 14 14 7 7 6
        TCNGA Hpy188I 246 241 199 156 56 56 40 6
        GTNAC MaeIII 565 435
        GTSAC NmuCI, Tsp45I 565 435
        AATT Sse9I, TasI, Tsp509I, TspEI 178 153 149 121 79 50 44 43 40 39 34 33 27 10
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00028907
    Transcript: CBG06663b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG06663b.1:c.147+475A>T
        Intron_number: 4/8
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP