WormBase Tree Display for Sequence: Y79H2A
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| Y79H2A | DNA | Y79H2A | 66144 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00305901 | 52099 | 50522 | |
| WBGene00220214 | 15741 | 15809 | ||||
| WBGene00013579 | 27706 | 25907 | ||||
| WBGene00043997 | 25806 | 22288 | ||||
| WBGene00013581 | 38236 | 39028 | ||||
| WBGene00000273 | 17489 | 22258 | ||||
| WBGene00196031 | 12489 | 12415 | ||||
| WBGene00000201 | 55395 | 49361 | ||||
| WBGene00013580 | 49243 | 28453 | ||||
| CDS_child (252) | ||||||
| Transcript (18) | ||||||
| Nongenomic | yk147h9 | 49399 | 55091 | |||
| yk159b10 | 21890 | 22189 | ||||
| [cgc5603]:yk147h9 | 49399 | 53938 | ||||
| PCR_product (40) | ||||||
| Allele (1823) | ||||||
| Oligo_set (12) | ||||||
| Feature_object (412) | ||||||
| Feature_data | Y79H2A:Polysome | 1 | 66144 | |||
| Y79H2A:TranscriptionallyActiveRegion | 1 | 66144 | ||||
| Y79H2A:ChIPSeqTF | 1 | 66144 | ||||
| Y79H2A:TRF | 1 | 66144 | ||||
| Y79H2A:Dust | 1 | 66144 | ||||
| Y79H2A:inverted | 1 | 66144 | ||||
| Homol_data (21) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | Y75B8A | 66042 | ||||
| Overlap_left | Y56A3A | |||||
| Clone_left_end | Y79H2 | 1 | ||||
| Y75B8 | 66042 | |||||
| Y79H2A | 1 | |||||
| Clone_right_end | Y56A3 | 22776 | ||||
| C51G7 | 35690 | |||||
| Y79H2A | 66144 | |||||
| DB_info | Database | EMBL | NDB_AC | AL110501 | ||
| NDB_SV | AL110501.2 | |||||
| Secondary_accession | AL022287 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 57819 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Matthews L | ||||
| From_laboratory | HX | |||||
| Date_directory | 990211 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | Y79H2A | ||||
| Remark | [rd 991018] added Clone_right_end C51G7 from St Louis sequence data | |||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | e4f3bdde593a7bff099db2f31d718f88 | ||||
| Status | Shotgun | 15 Oct 1997 00:00:00 | ||||
| Finished | 11 Feb 1999 00:00:00 | |||||
| Submitted | 11 Feb 1999 00:00:00 | |||||
| Annotated | 30 May 1999 00:00:00 | |||||
| Map | Sequence-III | Ends | Left | 6125 | ||
| Right | 6169 | |||||
| Interpolated_map_position | III | 14.0793 | ||||
| Assembly_tags | Finished Left | 1 | 4 | Y79H2A | ||
| Clone left end | 1 | 5 | Y79H2 | |||
| 66042 | 66047 | Y75B8 | ||||
| Clone right end | 22771 | 22776 | Y56A3 | |||
| Finished Right | 66141 | 66144 | Y79H2A | |||
| annotation | 49864 | 49968 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Short insert library made from pUC clone sz21h3. | |||
| 65809 | 65952 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Reads derived from 2 PCR products both made using oligos 35 and 18 | ||||
| Method | Genomic_canonical |
