WormBase Tree Display for Gene: WBGene00000273
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WBGene00000273 | SMap | S_parent | Sequence | Y79H2A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | brp-1 | Person_evidence | WBPerson625 | |||||
Sequence_name | Y79H2A.1 | ||||||||
Molecular_name | Y79H2A.1a | ||||||||
Y79H2A.1a.1 | |||||||||
CE23090 | |||||||||
Y79H2A.1c | |||||||||
CE47667 | |||||||||
Y79H2A.1c.1 | |||||||||
Other_name | pqn-93 | Accession_evidence | EMBL | AAA17722 | |||||
CELE_Y79H2A.1 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | brp-1 | ||||||||
DB_info | Database | AceView | gene | 3N113 | |||||
WormQTL | gene | WBGene00000273 | |||||||
WormFlux | gene | WBGene00000273 | |||||||
NDB | locus_tag | CELE_Y79H2A.1 | |||||||
NCBI | gene | 176637 | |||||||
RefSeq | protein | NM_001268223.3 | |||||||
NM_001027780.8 | |||||||||
TrEMBL | UniProtAcc | Q9U1S2 | |||||||
I2HAF5 | |||||||||
UniProt_GCRP | UniProtAcc | Q9U1S2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | brp | ||||||||
Allele (130) | |||||||||
Strain | WBStrain00031809 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00023910 | ||||||||
00098320 | |||||||||
00098321 | |||||||||
Ortholog (19) | |||||||||
Structured_description | Concise_description | brp-1 encodes a glutamine-rich protein that is conserved in nematodes, but that has no known homologies or sequence motifs; BRP-1 is able to bypass the need for the S. cerevisiae mating pheromone MAP kinase cascade to activate the mating pheromone-responsive gene FUSl. | Paper_evidence | WBPaper00014908 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y79H2A.1a | |||||||
Y79H2A.1c | |||||||||
Corresponding_CDS_history | Y79H2A.1b:wp275 | ||||||||
Y79H2A.1d:wp275 | |||||||||
Y79H2A.1e:wp275 | |||||||||
Corresponding_transcript | Y79H2A.1a.1 | ||||||||
Y79H2A.1c.1 | |||||||||
Other_sequence (65) | |||||||||
Associated_feature (11) | |||||||||
Transcription_factor | WBTranscriptionFactor000150 | ||||||||
Experimental_info | RNAi_result (15) | ||||||||
Expr_pattern | Expr1014860 | ||||||||
Expr1030177 | |||||||||
Expr1161929 | |||||||||
Expr2009659 | |||||||||
Expr2027898 | |||||||||
Microarray_results (31) | |||||||||
Expression_cluster (236) | |||||||||
Interaction (109) | |||||||||
Map_info | Map | III | Position | 13.9269 | Error | 0.111109 | |||
Positive | Positive_clone | Y79H2A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4904 | |||||||
5038 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00014908 | ||||||||
WBPaper00029058 | |||||||||
WBPaper00030811 | |||||||||
WBPaper00035598 | |||||||||
WBPaper00062388 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |