WormBase Tree Display for Gene: WBGene00000273
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| WBGene00000273 | SMap | S_parent | Sequence | Y79H2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | brp-1 | Person_evidence | WBPerson625 | |||||
| Sequence_name | Y79H2A.1 | ||||||||
| Molecular_name | Y79H2A.1a | ||||||||
| Y79H2A.1a.1 | |||||||||
| CE23090 | |||||||||
| Y79H2A.1c | |||||||||
| CE47667 | |||||||||
| Y79H2A.1c.1 | |||||||||
| Other_name | pqn-93 | Accession_evidence | EMBL | AAA17722 | |||||
| CELE_Y79H2A.1 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | brp-1 | ||||||||
| DB_info | Database | AceView | gene | 3N113 | |||||
| WormQTL | gene | WBGene00000273 | |||||||
| WormFlux | gene | WBGene00000273 | |||||||
| NDB | locus_tag | CELE_Y79H2A.1 | |||||||
| NCBI | gene | 176637 | |||||||
| RefSeq | protein | NM_001268223.3 | |||||||
| NM_001027780.8 | |||||||||
| TrEMBL | UniProtAcc | Q9U1S2 | |||||||
| I2HAF5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U1S2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | brp | ||||||||
| Allele (130) | |||||||||
| Strain | WBStrain00031809 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023910 | ||||||||
| 00098320 | |||||||||
| 00098321 | |||||||||
| Ortholog (19) | |||||||||
| Structured_description | Concise_description | brp-1 encodes a glutamine-rich protein that is conserved in nematodes, but that has no known homologies or sequence motifs; BRP-1 is able to bypass the need for the S. cerevisiae mating pheromone MAP kinase cascade to activate the mating pheromone-responsive gene FUSl. | Paper_evidence | WBPaper00014908 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y79H2A.1a | |||||||
| Y79H2A.1c | |||||||||
| Corresponding_CDS_history | Y79H2A.1b:wp275 | ||||||||
| Y79H2A.1d:wp275 | |||||||||
| Y79H2A.1e:wp275 | |||||||||
| Corresponding_transcript | Y79H2A.1a.1 | ||||||||
| Y79H2A.1c.1 | |||||||||
| Other_sequence (65) | |||||||||
| Associated_feature (11) | |||||||||
| Transcription_factor | WBTranscriptionFactor000150 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1014860 | ||||||||
| Expr1030177 | |||||||||
| Expr1161929 | |||||||||
| Expr2009659 | |||||||||
| Expr2027898 | |||||||||
| Microarray_results | SMD_C51G7.C | ||||||||
| SMD_C51G7.H | |||||||||
| SMD_C51G7.I | |||||||||
| SMD_Y79H2A.1 | |||||||||
| 180489_at | |||||||||
| A_12_P105361 | |||||||||
| Aff_C51G7.C | |||||||||
| GPL13394_WBGene00000273 | |||||||||
| GPL13914_Y79H2A.1 | |||||||||
| GPL14144_Y79H2A.1a_1373-1432_0.957_1_A | |||||||||
| GPL14144_Y79H2A.1a_1445-1504_0.956_2_B | |||||||||
| GPL14144_Y79H2A.1a_1517-1576_0.930_12_C | |||||||||
| GPL19516_CGZ0054911 | |||||||||
| GPL19516_CGZ0054912 | |||||||||
| GPL19516_CGZ0054913 | |||||||||
| GPL19516_CGZ0054914 | |||||||||
| GPL19516_CGZ0054915 | |||||||||
| GPL21109_Y79H2A.1a | |||||||||
| GPL21109_Y79H2A.1e | |||||||||
| GPL3518_CE23090 | |||||||||
| GPL8304_CE_WBGene00000273_A | |||||||||
| GPL8304_CE_WBGene00000273_B | |||||||||
| GPL8304_CE_WBGene00000273_C | |||||||||
| GPL8673_Y79H2A_1aP00433 | |||||||||
| GPL8673_Y79H2A_1aP00440 | |||||||||
| GPL8673_Y79H2A_1aP00452 | |||||||||
| GPL8673_Y79H2A_1bP00010 | |||||||||
| GPL8673_Y79H2A_1bP00423 | |||||||||
| GPL8673_Y79H2A_1bP00981 | |||||||||
| GPL9450_Y79H2A.1 | |||||||||
| cea2.c.24793 | |||||||||
| Expression_cluster (236) | |||||||||
| Interaction (109) | |||||||||
| Map_info | Map | III | Position | 13.9269 | Error | 0.111109 | |||
| Positive | Positive_clone | Y79H2A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4904 | |||||||
| 5038 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00014908 | ||||||||
| WBPaper00029058 | |||||||||
| WBPaper00030811 | |||||||||
| WBPaper00035598 | |||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
