WormBase Tree Display for Gene: WBGene00013580
expand all nodes | collapse all nodes | view schema
| WBGene00013580 | SMap | S_parent | Sequence | Y79H2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y79H2A.3 | |||||||
| Molecular_name (21) | |||||||||
| Other_name | CELE_Y79H2A.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | Y79H2A.3 | ||||||||
| DB_info | Database | AceView | gene | 3N122C | |||||
| 3N122 | |||||||||
| WormQTL | gene | WBGene00013580 | |||||||
| WormFlux | gene | WBGene00013580 | |||||||
| NDB | locus_tag | CELE_Y79H2A.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013580|UniProtKB=Q9U1R8 | |||||||
| family | PTHR11603 | ||||||||
| NCBI | gene | 176638 | |||||||
| RefSeq | protein | NM_001268230.2 | |||||||
| NM_001268229.3 | |||||||||
| NM_001268227.4 | |||||||||
| NM_001268226.3 | |||||||||
| NM_001027785.5 | |||||||||
| NM_001268228.3 | |||||||||
| NM_001027784.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF350590 | |||||||
| TrEMBL | UniProtAcc | H8ESF6 | |||||||
| H8ESF8 | |||||||||
| Q7K705 | |||||||||
| Q9U1R8 | |||||||||
| H8ESF7 | |||||||||
| H8ESG0 | |||||||||
| H8ESF9 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U1R8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (640) | |||||||||
| Strain | WBStrain00037559 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023600 | ||||||||
| Contained_in_operon | CEOP3750 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in ABalppappa; ABarappppa; germ line; intestine; and neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including dpy-10; hsf-1; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by eight chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y79H2A.3a | |||||||
| Y79H2A.3b | |||||||||
| Y79H2A.3c | |||||||||
| Y79H2A.3d | |||||||||
| Y79H2A.3e | |||||||||
| Y79H2A.3f | |||||||||
| Y79H2A.3g | |||||||||
| Corresponding_CDS_history | Y79H2A.3a:wp200 | ||||||||
| Y79H2A.3b:wp200 | |||||||||
| Corresponding_transcript | Y79H2A.3a.1 | ||||||||
| Y79H2A.3b.1 | |||||||||
| Y79H2A.3c.1 | |||||||||
| Y79H2A.3d.1 | |||||||||
| Y79H2A.3e.1 | |||||||||
| Y79H2A.3f.1 | |||||||||
| Y79H2A.3g.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature (15) | |||||||||
| Transcription_factor | WBTranscriptionFactor000868 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00012278 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012279 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071371 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027547 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058527 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026966 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006846 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013237 | ||||||||
| Expr1036071 | |||||||||
| Expr1161933 | |||||||||
| Expr2008445 | |||||||||
| Expr2026686 | |||||||||
| Microarray_results (35) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000420760 | ||||||||
| WBInteraction000533606 | |||||||||
| WBInteraction000533671 | |||||||||
| WBInteraction000546296 | |||||||||
| WBInteraction000557786 | |||||||||
| WBInteraction000570408 | |||||||||
| WBInteraction000575141 | |||||||||
| WBInteraction000576720 | |||||||||
| Map_info | Positive | Positive_clone | Y79H2A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 14.1459 | |||||||
| Method | Gene |
