WormBase Tree Display for Sequence: F21A9

F21A9 DNA: F21A9 13469
  SMap: S_child: Gene_child: WBGene00219678 3669 5083
        WBGene00255568 10298 10368
        WBGene00017651 9562 6157
        WBGene00017650 10217 13328
      CDS_child: F21A9.1:wp102 12256 13240
        F21A9.1:wp160 12397 13240
        F21A9.1a 12300 13240
        F21A9.2 9347 6224
        F21A9.2:wp156 8890 6224
        F21A9.2:wp213 8594 6224
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g155_x8_I_m 8513 8260
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g138_x8_I_m 8890 8538
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g116n11_x8_I_m 6427 6368
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g118_x8_I_m 7870 6365
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g178_x8_I_p 12675 13054
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g137_x8_I_m 6427 6227
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g168_x8_I_m 8890 8505
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g139_x8_I_m 8890 8142
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g89_x8_I_m 7870 6227
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g65_x8_I_m 6355 6227
        RNASEQ_embryo_him-8_20dC_post-L1_g135_x8_I_m 8039 7832
        RNASEQ_embryo_him-8_20dC_post-L1_g113_x8_I_m 6427 6227
        RNASEQ_embryo_him-8_20dC_post-L1_g125_x8_I_m 8235 8136
        RNASEQ_embryo_him-8_20dC_post-L1_g110_x8_I_m 9347 8236
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g191_x8_I_p 11379 11462
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g121_x8_I_m 9347 8236
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g171_x8_I_p 13016 13117
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g101_x8_I_m 8039 6233
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g121s2k69_x8_I_m 8594 8233
        RNASEQ_L4_soma_JK1107_no_DNaseI_g213_x8_I_m 8271 8172
        RNASEQ_L4_soma_JK1107_no_DNaseI_g115_x8_I_m 6355 6227
        RNASEQ_L4_soma_JK1107_no_DNaseI_g107_x8_I_p 12675 13201
        RNASEQ_L4_soma_JK1107_no_DNaseI_g134_x8_I_m 8890 8293
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g146_x8_I_m 8271 8148
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g100n11_x8_I_m 6427 6227
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g197_x8_I_p 11379 11483
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g176_x8_I_m 8039 7916
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g154_x8_I_m 8890 8505
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g117_x8_I_p 12675 12770
        RNASEQ_early_embryo_g100n11_x8_I_m 9347 6227
        RNASEQ_early_embryo_g131_x8_I_p 11433 11492
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g104_x8_I_p 12300 13237
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g84_x8_I_m 9347 6227
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g113_x8_I_m 6280 6233
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g105_x8_I_m 8890 6338
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g98_x8_I_m 6427 6338
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g145_x8_I_m 8594 8511
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g113_x8_I_m 8039 6703
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g149_x8_I_m 8594 8239
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g128_x8_I_m 8235 8118
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g124_x8_I_m 8039 6871
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g169_x8_I_m 8513 8251
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g165_x8_I_m 8039 7901
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g172_x8_I_m 7828 6820
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g131_x8_I_m 7870 6658
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g194_x8_I_m 8594 8284
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g154_x8_I_m 6427 6236
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g143_x8_I_m 8594 8296
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g125_x8_I_m 6280 6227
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g131n11_x8_I_m 9347 8281
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g172_x8_I_p 12714 12767
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g129_x8_I_m 7870 6332
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g126n11_x8_I_m 6427 6233
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g155_x8_I_m 8594 8305
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g175_x8_I_m 8890 8807
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g154_x8_I_m 8594 8547
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g155_x8_I_p 11457 11957
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g136_x8_I_m 8039 6793
        F21A9.gc1 8890 6224
        F21A9.gc2 10461 13240
        ContigI.elegans.jigsaw.513.mRNA513 12295 13262
        ContigI.elegans.jigsaw.512.mRNA512 8601 6157
        AG1201_RIT1P.1576.T1 3433 3630
        AG1201_RIT1P.1419.T3 4159 4260
        AG1201_RIT1P.1419.T1 4167 4951
        AG1201_F21A9.2.T5 7564 6224
        AG1201_F21A9.2.T2 8890 6224
        AG1201_F21A9.2.T1 9347 6224
        AG1201_F21A9.1.T1 12300 13240
      Transcript: F21A9.3 3669 5083
        F21A9.4 10298 10368
        F21A9.4a 10298 10321
        F21A9.4b 10344 10368
        F21A9.1a.1 10217 13328
        F21A9.1a.2 11006 13328
        F21A9.1b.1 11145 13240
        F21A9.2.1 9562 6157
      PCR_product: cenix:107-e11 12240 13118
        cenix:95-d9 7918 9409
        mv_F21A9.1 12257 13238
        mv_F21A9.2 6226 8889
        mv_F21A9.a 6603 8889
        p_F21A9.1_93 10256 12255
        sjj2_F21A9.1 11972 13209
        sjj2_F21A9.2 7918 9089
        sjj_F21A9.1 12240 13408
        sjj_F21A9.2 6312 8435
      Allele: WBVar02071535 5368 5388
        WBVar01900324 4263 4263
        WBVar00330988 1049 1049
        WBVar00330989 2126 2126
        WBVar00330990 2408 2408
        WBVar00330991 2470 2470
        WBVar00330992 3198 3198
        WBVar00330993 3953 3953
        WBVar00330994 5789 5789
        WBVar00330995 6047 6047
        WBVar00330996 6347 6347
        WBVar00330997 6610 6610
        WBVar00330998 6962 6962
        WBVar00330999 7844 7844
        WBVar00331000 8579 8579
        WBVar00331001 8580 8580
        WBVar00255275 7096 7097
        WBVar00331002 8644 8644
        WBVar00255277 7096 7097
        WBVar00331003 9061 9061
        WBVar00331004 9253 9253
        WBVar00331005 9474 9474
        WBVar01846275 5091 5091
        WBVar01846276 12176 12176
        WBVar01826382 12314 12314
        WBVar00331006 9785 9785
        WBVar00331007 10207 10207
        WBVar00331008 10469 10469
        WBVar00331009 10519 10519
        WBVar00331010 11165 11165
        WBVar00331011 11978 11978
        WBVar00030991 9809 9809
        WBVar00331012 11983 11983
        WBVar01988494 10710 10716
        WBVar00331013 12980 12980
        WBVar01956830 2345 2373
        WBVar01431168 2598 2598
        WBVar01431169 2623 2623
        WBVar01431172 8732 8732
        WBVar01431173 11113 11113
        WBVar00031001 12017 12017
        WBVar01431175 12889 12889
        WBVar00276375 6095 6095
        WBVar00031006 12243 12243
        WBVar02039405 445 450
        WBVar02039406 3748 3748
        WBVar02039408 8995 8996
        WBVar02039409 10162 10176
        WBVar02039410 11606 11606
        WBVar02039411 11686 11686
        WBVar00627875 387 387
        WBVar00627876 777 777
        WBVar00627877 1175 1175
        WBVar00092054 7508 8793
        WBVar01398883 10326 10326
        WBVar00627878 1293 1293
        WBVar00627879 1310 1310
        WBVar00627880 1727 1727
        WBVar00627881 2113 2113
        WBVar00627882 2244 2244
        WBVar00627883 2655 2655
        WBVar00627884 2756 2756
        WBVar00627885 2773 2773
        WBVar00627886 2951 2951
        WBVar00627887 3434 3434
        WBVar00627888 3595 3595
        WBVar00627889 3841 3841
        WBVar01475316 1856 1856
        WBVar01475317 4657 4658
        WBVar00627890 4644 4644
        WBVar00627891 4985 4985
        WBVar01475318 10326 10326
        WBVar00627892 5846 5846
        WBVar00627893 5900 5900
        WBVar00536338 2229 2229
        WBVar00627894 6052 6052
        WBVar00627895 6072 6072
        WBVar00627896 6208 6208
        WBVar00627897 6364 6364
        WBVar00627898 6543 6543
        WBVar00627899 6597 6597
        WBVar00627900 6653 6653
        WBVar00627901 6687 6687
        WBVar01411416 3999 4000
        WBVar00627902 6696 6696
        WBVar00627903 6866 6866
        WBVar00627904 7136 7136
        WBVar00627905 8009 8009
        WBVar00627906 8046 8046
        WBVar00627907 8393 8393
        WBVar00627908 8420 8420
        WBVar00627909 8604 8604
        WBVar00627910 8613 8613
        WBVar00627911 8702 8702
        WBVar00627912 8702 8702
        WBVar00627913 8745 8745
        WBVar01280805 1441 1441
        WBVar00627914 9341 9341
        WBVar00627915 9362 9362
        WBVar00627916 9421 9421
        WBVar01343026 1760 1760
        WBVar01280808 1705 1705
        WBVar01280809 1725 1725
        WBVar00627917 9471 9471
        WBVar01280810 2437 2437
        WBVar00627918 9581 9581
        WBVar01280811 2448 2448
        WBVar00627919 9634 9634
        WBVar01280812 2679 2679
        WBVar00627920 9707 9707
        WBVar01280813 2727 2727
        WBVar00627921 9955 9955
        WBVar00627922 9990 9990
        WBVar02126974 2312 2312
        WBVar01280814 3060 3060
        WBVar01280815 3474 3474
        WBVar00627923 10147 10147
        WBVar02126975 11053 11053
        WBVar00627924 10347 10347
        WBVar01280816 3973 3973
        WBVar00627925 10531 10531
        WBVar01280819 4803 4803
        WBVar01280820 5636 5636
        WBVar00627926 10586 10586
        WBVar01280821 5717 5717
        WBVar00627927 10633 10633
        WBVar00627928 10731 10731
        WBVar01280822 5722 5722
        WBVar01280823 6088 6088
        WBVar00627929 10989 10989
        WBVar01280824 6990 6990
        WBVar00627930 11074 11074
        WBVar01280825 7427 7427
        WBVar00627931 11106 11106
        WBVar01280826 7854 7854
        WBVar00627932 11112 11112
        WBVar00627933 11115 11115
        WBVar01280827 8629 8629
        WBVar00627934 11151 11151
        WBVar01280828 8642 8642
        WBVar01280830 8798 8798
        WBVar00627935 11274 11274
        WBVar00627936 11378 11378
        WBVar01280831 8887 8887
        WBVar00627937 11448 11448
        WBVar01280832 9052 9052
        WBVar00627938 11663 11663
        WBVar01280833 9103 9103
        WBVar01280834 9145 9145
        WBVar00627939 11889 11889
        WBVar00627940 11965 11965
        WBVar01280835 9257 9257
        WBVar01280836 9287 9287
        WBVar00627941 11983 11983
        WBVar00627942 12098 12098
        WBVar01280837 9535 9535
        WBVar01280839 9923 9923
        WBVar00627943 12191 12191
        WBVar00097665 11606 11606
        WBVar00097666 11607 11607
        WBVar01280841 10262 10262
        WBVar00627944 12194 12194
        WBVar01280842 10923 10923
        WBVar00627945 12224 12224
        WBVar00627946 12300 12300
        WBVar01280843 11026 11026
        WBVar00627947 12792 12792
        WBVar01280844 11315 11315
        WBVar01280845 11343 11343
        WBVar01280846 11416 11416
        WBVar01280847 11844 11844
        WBVar00152580 4648 4648
        WBVar01280849 12170 12170
        WBVar01280852 12347 12347
        WBVar00152583 12584 12584
        WBVar01297361 2450 2451
        WBVar01280853 12796 12796
        WBVar01622856 9484 9484
        WBVar01801270 994 994
        WBVar01801271 2890 2890
        WBVar01801272 6509 6509
      Oligo_set: Aff_F21A9.1 12594 13240
        Aff_F21A9.2 7933 6224
      Feature_object: WBsf983204 6481 6534
        WBsf983205 9364 9514
        WBsf983206 10924 11074
        WBsf983207 11984 12134
        WBsf1009540 9364 9514
        WBsf1009541 10944 11094
        WBsf1009542 11984 12134
        WBsf020297 3649 3650
        WBsf024494 13251 13250
        WBsf024541 13272 13267
        WBsf048022 13249 13249
        WBsf048974 7916 7916
        WBsf054305 6336 6336
        WBsf123172 6920 6919
        WBsf123173 9563 9562
        WBsf133713 6336 6336
        WBsf134630 13249 13249
        WBsf139001 8278 8278
        WBsf141429 7916 7916
        WBsf146177 13256 13255
        WBsf217421 13241 13272
        WBsf217422 13241 13323
        WBsf219169 6223 6161
        WBsf240877 13274 13275
        WBsf240878 6157 6156
        WBsf241535 13257 13256
        WBsf269716 13253 13252
        WBsf603172 5084 5085
        WBsf604174 13281 13280
        WBsf605318 13269 13268
        WBsf606302 13243 13242
        WBsf948148 227 228
        WBsf948149 3649 3650
        WBsf948150 4946 4947
        WBsf948151 4946 4947
        WBsf948152 8346 8345
        WBsf948153 8619 8618
        WBsf948154 8909 8908
        WBsf948155 9555 9554
        WBsf948156 11030 11029
        WBsf948157 13015 13016
        WBsf979581 13250 13249
        WBsf979946 5089 5090
        WBsf282398 12502 13401
        WBsf285000 9951 10515
        WBsf286247 12539 13161
        WBsf286957 10773 11110
        WBsf288429 10128 10315
        WBsf289901 13061 13086
        WBsf292064 10025 10437
        WBsf293329 10858 11081
        WBsf295308 9929 10432
        WBsf299734 10714 11114
        WBsf300830 9915 10224
        WBsf303069 12634 13268
        WBsf309858 10100 10379
        WBsf312679 12630 13288
        WBsf322122 10720 11149
        WBsf322877 9916 10210
        WBsf325066 10196 10367
        WBsf326650 10182 10430
        WBsf328182 3213 3423
        WBsf328211 10826 11106
        WBsf340163 9428 9499
        WBsf340354 13184 13248
        WBsf045017 3106 3793
        WBsf045018 10330 10501
        WBsf649041 9433 9334
        WBsf656126 12623 12654
        WBsf671569 10978 10996
        WBsf672240 10077 10097
        WBsf672241 10205 10253
        WBsf693104 9991 9958
        WBsf693851 10118 10062
      Feature_data: F21A9:TranscriptionallyActiveRegion 1 13469
        F21A9:ChIPSeqTF 1 13469
        F21A9:TRF 1 13469
        F21A9:Dust 1 13469
        F21A9:inverted 1 13469
      Homol_data: F21A9:RNAi 1 13469
        F21A9:SAGE 1 13469
        F21A9:Mass-spec 1 13469
        F21A9:BLAT_ncRNA 1 13469
        F21A9:TEC_RED 1 13469
        F21A9:wublastx_brenneri 1 13469
        F21A9:wublastx_briggsae 1 13469
        F21A9:wublastx_brugia 1 13469
        F21A9:wublastx_japonica 1 13469
        F21A9:wublastx_ovolvulus 1 13469
        F21A9:wublastx_pristionchus 1 13469
        F21A9:wublastx_remanei 1 13469
        F21A9:wublastx_sratti 1 13469
        F21A9:wublastx_worm 1 13469
        F21A9:RepeatMasker 1 13469
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: T12F5 13270
    Overlap_left: H26D21
    Clone_left_end: F21A9 1
  DB_info: Database: EMBL NDB_AC FO081190
        NDB_ID _U97401
        NDB_SV FO081190.1
    Secondary_accession: U97401
    DB_remark: The 5' clone is H26D21, 199 bp overlap; the 3' clone is T12F5, 200 bp overlap. Actual start of this clone is at base position 1 of F21A9.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Tin A
      Graves T
    From_laboratory: RW
    Date: 20 Sep 1996 00:00:00
    Date_directory: 960917
    Species: Caenorhabditis elegans
  Visible: Clone: F21A9
  Properties: Genomic_canonical
    Checksum: MD5: 7341a88d42b7dc096372cc0b0aa1d750
    Status: Finished
      Submitted: 20 Sep 1996 00:00:00
  Map: Sequence-I
  Interpolated_map_position: I -2.85955
  Method: Genomic_canonical