WormBase Tree Display for Sequence: C09F12

C09F12 DNA: C09F12 16919
  SMap: S_child: Gene_child: WBGene00165541 9028 9048
        WBGene00169404 337 317
        WBGene00196538 15702 15564
        WBGene00007482 12107 15171
        WBGene00000522 5638 7467
      CDS_child: C09F12.1 6435 7362
        C09F12.2 12175 14991
        C09F12.2:wp83 13335 14530
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g11n11_x23_X_p 6435 7359
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g97_x23_X_p 6642 6982
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g49n11_x23_X_p 6435 6596
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g86_x23_X_p 6435 7359
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g164_x23_X_p 14067 14359
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g161_x23_X_p 14779 14913
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g179_x23_X_p 13558 13614
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g109_x23_X_p 14809 14910
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g71_x23_X_p 6883 6943
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g35_x23_X_p 6953 7359
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g170_x23_X_p 16508 16667
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g11n11_x23_X_p 6435 6940
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g179_x23_X_p 13421 13603
        RNASEQ_embryo_him-8_20dC_post-L1_g82_x23_X_p 6435 6521
        RNASEQ_embryo_him-8_20dC_post-L1_g95_x23_X_p 6642 6698
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g33_x23_X_p 6435 7359
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g114_x23_X_m 301 149
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g176_x23_X_p 14584 14763
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g209_x23_X_p 14256 14345
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g232_x23_X_p 14924 14989
        RNASEQ_L4_soma_JK1107_no_DNaseI_g232_x23_X_m 301 185
        RNASEQ_L4_soma_JK1107_no_DNaseI_g101n11_x23_X_p 14779 14988
        RNASEQ_L4_soma_JK1107_no_DNaseI_g22n11_x23_X_p 6435 7359
        RNASEQ_L4_soma_JK1107_no_DNaseI_g202_x23_X_p 14593 14835
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g187_x23_X_m 544 404
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g172_x23_X_m 890 629
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g136_x23_X_p 16204 16429
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g105_x23_X_p 6435 7359
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g153_x23_X_m 398 276
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g118_x23_X_p 15733 15825
        RNASEQ_early_embryo_g124_x23_X_p 6435 6695
        RNASEQ_early_embryo_g81_x23_X_p 6759 7359
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g168_x23_X_p 6435 6497
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g78_x23_X_p 6642 7359
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g103_x23_X_p 6435 7359
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g74_x23_X_p 13335 14988
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g151_x23_X_p 14779 14988
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g213_x23_X_p 14524 14598
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g159_x23_X_m 484 359
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g171_x23_X_p 13558 13614
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g13n11_x23_X_p 6435 7359
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g15n11_x23t1_X_p 6435 7359
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g90_x23_X_p 13386 14988
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g48_x23_X_p 6435 7359
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g164_x23_X_p 14779 14832
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g11n11_x23_X_p 6435 7359
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g198_x23_X_p 14145 14308
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g260_x23_X_p 13675 13722
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g29n11_x23_X_p 6435 7359
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g185_x23_X_p 14800 14925
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g27_x23_X_p 6435 7359
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g19n11_x23_X_p 6435 7359
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g188_x23_X_p 15730 15957
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g252_x23_X_p 13131 13184
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g108_x23_X_p 16204 16619
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g110_x23_X_p 6435 7359
        C09F12.gc1 1049 113
        C09F12.gc2 6435 7362
        C09F12.gc3 12175 14991
        C09F12.gc4 15700 16890
        ContigX.elegans.jigsaw.1742.mRNA1742 6428 7454
        ContigX.elegans.jigsaw.1743.mRNA1743 12140 15171
        AG1201_C09F12.1.T3 6435 7362
        AG1201_C09F12.1.T1 7261 7362
        AG1201_C09F12.2.T1 12175 14991
      Transcript: C09F12.4 9028 9048
        C09F12.5 337 317
        C09F12.6 15702 15564
        C09F12.1.1 5638 7467
        C09F12.1.2 6421 7467
        C09F12.2.1 12107 15171
      Nongenomic: yk304e5 5738 7374
      PCR_product: cenix:106-e7 13168 13967
        cenix:117-a4 5866 7531
        mv_C09F12.1 6436 7360
        mv_C09F12.2 13336 14528
        p_W04G3.8_93 14990 15699
        sjj_C09F12.1 6259 7450
        sjj_C09F12.2 13565 14665
        sjj_W04G3.8 15706 16787
      Allele: WBVar01552211 5249 5249
        WBVar01185304 13061 13061
        WBVar01185305 13182 13182
        WBVar01552212 8803 8803
        WBVar01185306 13545 13545
        WBVar00093636 7307 8501
        WBVar01552213 13671 13671
        WBVar02149099 6758 6758
        WBVar01185307 13605 13605
        WBVar01185308 13651 13651
        WBVar01185309 13685 13685
        WBVar01185310 13729 13729
        WBVar01185311 14131 14131
        WBVar01185312 14541 14541
        WBVar01185313 14789 14789
        WBVar01620482 4389 4389
        WBVar01185314 14920 14920
        WBVar01620483 9663 9663
        WBVar01185315 15061 15061
        WBVar01620484 9972 9972
        WBVar01185316 15123 15123
        WBVar01928263 3228 3228
        WBVar01185317 15391 15391
        WBVar01185318 15525 15525
        WBVar01928264 4623 4624
        WBVar01928265 5239 5239
        WBVar01185319 15537 15537
        WBVar01928266 15830 15831
        WBVar01185320 15621 15621
        WBVar01185321 15891 15891
        WBVar01185322 16052 16052
        WBVar01185323 16299 16299
        WBVar02156691 6418 7527
        WBVar01690234 682 682
        WBVar01185324 16566 16566
        WBVar01185325 16669 16669
        WBVar01690235 6355 6355
        WBVar01185326 16673 16673
        WBVar01185327 16713 16713
        WBVar01185328 16744 16744
        WBVar01185329 16828 16828
        WBVar01759382 1321 1321
        WBVar01471042 1591 1591
        WBVar01471043 1932 1932
        WBVar01759383 1840 1840
        WBVar01471044 1938 1938
        WBVar01759384 9608 9608
        WBVar01471045 2047 2047
        WBVar01759385 10145 10145
        WBVar01759386 13288 13288
        WBVar01471046 3135 3135
        WBVar01759387 15752 15752
        WBVar01471047 3151 3151
        WBVar01471049 3202 3202
        WBVar01488714 16048 16048
        WBVar01816814 11556 11556
        WBVar01914254 10720 10720
        WBVar01185204 86 86
        WBVar01185205 272 272
        WBVar01487640 10223 10276
        WBVar01185206 732 732
        WBVar00254213 8409 8410
        WBVar01185207 929 929
        WBVar01527685 9629 9629
        WBVar01185208 941 941
        WBVar01185209 982 982
        WBVar01527686 13026 13026
        WBVar01185210 1479 1479
        WBVar01185211 1533 1533
        WBVar01185212 1648 1648
        WBVar01185213 1828 1828
        WBVar02140064 1028 1029
        WBVar02140065 1511 1511
        WBVar01185214 2022 2022
        WBVar01493169 16078 16078
        WBVar01185215 2087 2087
        WBVar01185216 2181 2181
        WBVar01185217 2218 2218
        WBVar01185218 2238 2238
        WBVar02148610 15826 15826
        WBVar01474005 6905 6904
        WBVar02148613 15727 15739
        WBVar01185219 2323 2323
        WBVar01185220 2624 2624
        WBVar01185221 3242 3242
        WBVar01185222 3348 3348
        WBVar01981294 2782 2787
        WBVar01185223 3395 3395
        WBVar01185224 3522 3522
        WBVar01185225 3526 3526
        WBVar01185226 3529 3529
        WBVar01185227 3607 3607
        WBVar01185228 3702 3702
        WBVar01185229 3818 3818
        WBVar01185230 4036 4036
        WBVar01185231 4080 4080
        WBVar01185232 4317 4317
        WBVar01185233 4381 4381
        WBVar01185234 4400 4400
        WBVar01185235 4913 4913
        WBVar01185236 5198 5198
        WBVar01185237 5217 5217
        WBVar01185238 5417 5417
        WBVar00516546 263 263
        WBVar00516547 631 631
        WBVar01185239 5449 5449
        WBVar00516548 1678 1678
        WBVar01185240 5467 5467
        WBVar01185241 5480 5480
        WBVar00516549 2211 2211
        WBVar01185242 5556 5556
        WBVar00516550 2611 2611
        WBVar01185243 5654 5654
        WBVar00516551 3337 3337
        WBVar00516552 5668 5668
        WBVar01185244 5990 5990
        WBVar01185245 6098 6098
        WBVar00516553 5873 5873
        WBVar01185246 6154 6154
        WBVar01787006 9787 9787
        WBVar00516554 6101 6101
        WBVar00516555 6835 6835
        WBVar01787007 11739 11739
        WBVar01185247 6221 6221
        WBVar01185248 6221 6221
        WBVar00516556 7507 7507
        WBVar00516557 7769 7769
        WBVar01185249 6380 6380
        WBVar00068430 4103 4103
        WBVar00516558 7784 7784
        WBVar01185250 6519 6519
        WBVar01185251 6666 6666
        WBVar00516559 8166 8166
        WBVar00516560 8675 8675
        WBVar01185252 6977 6977
        WBVar00516561 8858 8858
        WBVar01185253 7098 7098
        WBVar00068435 5072 5072
        WBVar00082960 3181 3181
        WBVar00082961 3832 3832
        WBVar00516562 9222 9222
        WBVar01185254 7137 7137
        WBVar00516563 10258 10258
        WBVar01185255 7192 7192
        WBVar00082962 5153 5153
        WBVar00068440 5453 5453
        WBVar00082963 5248 5248
        WBVar01185256 7194 7194
        WBVar00516564 10698 10698
        WBVar01185257 7199 7199
        WBVar00082964 8481 8481
        WBVar00516565 11793 11793
        WBVar01185258 7327 7327
        WBVar00308521 4657 4657
        WBVar00516566 11870 11870
        WBVar00516567 12159 12159
        WBVar01185259 7509 7509
        WBVar00516568 12244 12244
        WBVar01185260 7752 7752
        WBVar00068445 7864 7864
        WBVar00516569 12619 12619
        WBVar01185261 7782 7782
        WBVar01185262 7806 7806
        WBVar00516570 13408 13408
        WBVar01185263 7831 7831
        WBVar00516571 14157 14157
        WBVar00253717 10434 10435
        WBVar00068450 8102 8102
        WBVar01185264 7952 7952
        WBVar00516572 14974 14974
        WBVar01185265 7988 7988
        WBVar00516573 15072 15072
        WBVar00100162 3059 3059
        WBVar01185266 8460 8460
        WBVar00516574 15239 15239
        WBVar00516575 16015 16015
        WBVar01185267 8614 8614
        WBVar00100163 3062 3062
        WBVar01185268 8614 8614
        WBVar00516576 16551 16551
        WBVar00100165 3436 3436
        WBVar00100166 3755 3755
        WBVar01185269 8721 8721
        WBVar00100167 5932 5932
        WBVar01185270 8745 8745
        WBVar01185271 8803 8803
        WBVar01185272 8861 8861
        WBVar01185273 9343 9343
        WBVar00100170 7454 7454
        WBVar01185274 9377 9377
        WBVar00100172 8840 8840
        WBVar01185275 9414 9414
        WBVar02027395 8884 8884
        WBVar01185276 9446 9446
        WBVar02027396 10953 10956
        WBVar01185277 9584 9584
        WBVar01185278 10050 10050
        WBVar00068470 9950 9950
        WBVar01185279 10174 10174
        WBVar01185280 10243 10243
        WBVar01185281 10355 10355
        WBVar00068475 10559 10559
        WBVar01185282 10409 10409
        WBVar01901585 3399 3399
        WBVar01185283 10671 10671
        WBVar01602171 8798 8798
        WBVar01185284 11063 11063
        WBVar01185285 11066 11066
        WBVar01185286 11076 11076
        WBVar01185287 11469 11469
        WBVar01185288 11756 11756
        WBVar01185289 11793 11793
        WBVar00068485 11488 11488
        WBVar01185290 11924 11924
        WBVar01185291 12057 12057
        WBVar01185292 12106 12106
        WBVar00068490 12019 12019
        WBVar01185293 12302 12302
        WBVar01185294 12384 12384
        WBVar01185295 12387 12387
        WBVar01185296 12652 12652
        WBVar00068495 13648 13648
        WBVar01661435 11558 11558
        WBVar01185297 12667 12667
        WBVar01185298 12695 12695
        WBVar02009067 16345 16345
        WBVar01185299 12700 12700
        WBVar01185300 12708 12708
        WBVar01185301 12812 12812
        WBVar01185302 12981 12981
        WBVar01987682 9590 9591
        WBVar00068505 14551 14551
        WBVar01552210 4649 4649
        WBVar01185303 13051 13051
      Oligo_set: Aff_C09F12.1 6435 7362
        Aff_C09F12.2 13842 14530
      Feature_object: WBsf1006892 778 928
        WBsf1006893 7498 7648
        WBsf1006894 8638 8788
        WBsf1006895 15458 15608
        WBsf1006896 15891 15946
        WBsf1023803 8618 8768
        WBsf1023804 9418 9568
        WBsf1023805 15438 15588
        WBsf1023806 15891 15946
        WBsf021015 6427 6428
        WBsf027902 1066 1065
        WBsf112011 7433 7433
        WBsf112012 14600 14600
        WBsf112704 6599 6599
        WBsf113037 6943 6943
        WBsf113757 7424 7424
        WBsf114805 7465 7465
        WBsf115321 7467 7467
        WBsf115884 7456 7456
        WBsf116161 6497 6497
        WBsf116453 7453 7453
        WBsf116996 7447 7447
        WBsf131752 7260 7261
        WBsf206802 7439 7439
        WBsf207674 7452 7452
        WBsf209453 7434 7434
        WBsf211630 6427 6428
        WBsf216283 7424 7425
        WBsf236329 7363 7422
        WBsf236330 7363 7462
        WBsf236331 14992 15166
        WBsf258636 7480 7481
        WBsf258637 15170 15171
        WBsf258638 15083 15084
        WBsf278664 7439 7440
        WBsf279001 7423 7424
        WBsf637258 7465 7466
        WBsf637600 7453 7454
        WBsf638314 8092 8093
        WBsf638341 7546 7547
        WBsf971867 2606 2607
        WBsf971868 12151 12152
        WBsf971870 14718 14719
        WBsf555937 14473 15869
        WBsf557932 5339 5755
        WBsf559244 15368 15675
        WBsf559403 14628 14882
        WBsf560897 2335 2474
        WBsf561534 2416 2468
        WBsf561988 2494 2511
        WBsf562831 14389 15704
        WBsf563376 5775 5811
        WBsf565865 15342 15707
        WBsf567779 15324 15788
        WBsf569472 5237 6151
        WBsf570339 15205 15689
        WBsf572679 5230 6341
        WBsf574896 15324 16100
        WBsf582362 5252 6229
        WBsf582991 15232 15738
        WBsf587903 5375 5971
        WBsf587973 7415 7994
        WBsf588254 3506 3991
        WBsf588382 13501 13779
        WBsf589865 5416 5876
        WBsf590134 7474 7938
        WBsf592224 3599 4063
        WBsf592241 7441 7998
        WBsf596093 15492 15644
        WBsf596752 15215 15553
        WBsf597801 5321 5768
        WBsf648512 5626 5660
        WBsf648513 15588 15777
        WBsf655704 15506 15311
        WBsf663312 6998 7000
        WBsf663313 14566 14584
        WBsf663314 14737 14764
        WBsf663315 14911 14985
        WBsf663316 16546 16578
        WBsf713330 1661 1658
        WBsf713331 5600 5573
        WBsf713332 14497 14493
        WBsf713333 14650 14619
        WBsf713334 14922 14865
        WBsf713335 14989 14981
        WBsf713336 15301 15209
        WBsf713337 16416 16385
        WBsf264348 12649 12772
        WBsf264349 12851 13066
      Feature_data: C09F12:Polysome 1 16919
        C09F12:TranscriptionallyActiveRegion 1 16919
        C09F12:ChIPSeqTF 1 16919
        C09F12:TRF 1 16919
        C09F12:Dust 1 16919
        C09F12:inverted 1 16919
      Homol_data: C09F12:RNAi 1 16919
        C09F12:SAGE 1 16919
        C09F12:TEC_RED 1 16919
        C09F12:G4_DNA 1 16919
        C09F12:wublastx_brenneri 1 16919
        C09F12:wublastx_briggsae 1 16919
        C09F12:wublastx_brugia 1 16919
        C09F12:wublastx_japonica 1 16919
        C09F12:wublastx_ovolvulus 1 16919
        C09F12:wublastx_pristionchus 1 16919
        C09F12:wublastx_remanei 1 16919
        C09F12:wublastx_sratti 1 16919
        C09F12:wublastx_worm 1 16919
        C09F12:RepeatMasker 1 16919
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: W04G3 16806
    Overlap_left: F58A3
    Clone_left_end: C09F12 1
      W04G3 16806
    Clone_right_end: F58A3 6785
  DB_info: Database: EMBL NDB_AC Z78537
        NDB_SV Z78537.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Harris BR
    From_laboratory: HX
    Date_directory: 960523
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: C09F12
  Properties: Genomic_canonical
    Checksum: MD5: e45ad03c92e62553169948ce8869f1b4
    Status: Finished: 23 May 1996 00:00:00
      Submitted: 23 Aug 1996 00:00:00
      Annotated: 19 Aug 1996 00:00:00
  Map: Sequence-X Ends: Left: 5965
        Right: 5996
  Interpolated_map_position: X 2.8574
  Assembly_tags: Finished Left 1 4
    Clone left end 1 4 C09F12
      16806 16813 W04G3
    oligo 9234 9262 C09F12 36.8 CAA TGA CTA GAG CTA CAT TTT TTG AAA AC 36.8 for klentaq
    Clone right end 6782 6785 F58A3
    Finished Right 16907 16919
  Method: Genomic_canonical