WormBase Tree Display for Pseudogene: W04G5.6
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| W04G5.6 | SMap | S_parent | Sequence | W04G5 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 37 | |||
| 92 | 227 | |||||
| 271 | 414 | |||||
| 456 | 576 | |||||
| 630 | 801 | |||||
| 846 | 955 | |||||
| 1001 | 1249 | |||||
| 1298 | 1403 | |||||
| 1449 | 1520 | |||||
| DB_info | DB_remark | coding pseudogene kin-23 | ||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Type | Coding_pseudogene | |||||
| Visible | Gene | WBGene00002205 | ||||
| Brief_identification | Pseudogene. | |||||
| Corresponding_PCR_product | cenix:80-c6 | |||||
| mv_W04G5.6 | ||||||
| sjj_W04G5.6 | ||||||
| smd_W04G5.6 | ||||||
| Corresponding_oligo_set | A_12_P117328 | |||||
| GPL19516_CGZ0038392 | ||||||
| GPL21109_W04G5.6 | ||||||
| GPL3518_CE28099 | ||||||
| GPL8304_CE_WBGene00002205_A | ||||||
| GPL8673_W04G5_6P00064 | ||||||
| GPL8673_W04G5_6P00518 | ||||||
| GPL8673_W04G5_6P00720 | ||||||
| GPL9450_W04G5.6 | ||||||
| cea2.p.19321 | ||||||
| Variation (38) | ||||||
| Microarray_results (12) | ||||||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 02 Oct 2019 13:28:09 | WBPerson4025 | ||||
| Remark | Annotated using Pfam | |||||
| [010606 kj] Changed last exon according to cDNA AF188749 but couldn't find solution for third intron | ||||||
| [080121 pad] Gene prediction may need converting into a pseudogene. The aligned mRNA sequence AF188749 is NOT EXPERIMENTAL so cannot be used to model the gene. This cds may be a redundant member of this kinase family. Exon 2 starts by utilising a poor splice site where a better pair exists 14bp upstream but this would introduce a single inframe stop, so one to watch in the future. | Curator_confirmed | WBPerson1983 | ||||
| [970715 dl] Prosite and Pfam signatures for tyrosine-protein kinase (PS00107, PS00109 & PF00069) | Curator_confirmed | WBPerson1846 | ||||
| [000127 dl] Prediction modified based on halfwise analysis | Curator_confirmed | WBPerson1846 | ||||
| [101021 pad] Modified the final intron inline with available EST data. The 5' end of this gene is still incorrect as the splicing contained in EST data cannot be modeled correctly. | Accession_evidence | NDB | FN905417 | |||
| [191002 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 | ||||
| [191002 gw3] This has been converted to a Pseudogene based on the RNASeq data. | Curator_confirmed | WBPerson4025 | ||||
| From_analysis | RNASeq | |||||
| Method | Pseudogene |
