WormBase Tree Display for Pseudogene: R09E10.4
expand all nodes | collapse all nodes | view schema
| R09E10.4 | SMap | S_parent | Sequence | R09E10 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 81 | |||
| 125 | 298 | |||||
| 348 | 545 | |||||
| 660 | 804 | |||||
| 848 | 1231 | |||||
| 1276 | 1473 | |||||
| 1529 | 1753 | |||||
| 2776 | 2919 | |||||
| 2963 | 3036 | |||||
| DB_info | DB_remark | coding pseudogene acs-23 | ||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Type | Coding_pseudogene | |||||
| Attributes | SubType | unprocessed_pseudogene | ||||
| Visible | Gene | WBGene00011174 | ||||
| Brief_identification | Pseudogene. | |||||
| Corresponding_PCR_product | cenix:134-d6 | |||||
| mv_R09E10.4 | ||||||
| sjj_R09E10.4 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Variation (47) | ||||||
| Microarray_results (17) | ||||||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 10 Sep 2015 00:00:00 | WBPerson4025 | ||||
| Remark | [040223 pad] Gene prediction altered to follow OST data. 3' truncation due to change of abnormally small intron. | Paper_evidence | ||||
| Accession_evidence | NDB | CB394579 | ||||
| Curator_confirmed | WBPerson1983 | |||||
| [060922 gw3] This is very likely to be a psudogene. It is truncated in comparison to other members of this gene family and the wormpep protein homology has what look very like frameshifts. The only reason for not making it a pseudogene is that the OST alignment splices nicely around the locations of the frameshifts. | Curator_confirmed | WBPerson4025 | ||||
| [150910 gw3] Converted this from a CDS to a Pseudogene because the RNASeq evidence backs up the OST evidence noted previously for this being a pseudogene. The transcript would contain premature termination codons in the last three exons. It looks like this is a degenerate copy of the neighbouring gene acs-18. | Curator_confirmed | WBPerson4025 | ||||
| From_analysis | RNASeq | |||||
| Method | Pseudogene |
