WormBase Tree Display for Pseudogene: C01B10.1
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| C01B10.1 | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C01B10 | ||
| Structure | Source_exons (19) | ||||
| DB_info | DB_remark | coding pseudogene drh-2 | |||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Type | Coding_pseudogene | ||||
| Attributes | Transcribed | ||||
| SubType | unprocessed_pseudogene | ||||
| Visible | Gene | WBGene00001091 | |||
| Matching_cDNA | AF480440 | ||||
| OSTF142H7_1 | |||||
| OSTR142H7_1 | |||||
| OSTF30006A08 | |||||
| Brief_identification | Curated pseudogene | ||||
| Corresponding_PCR_product | cenix:125-d6 | ||||
| cenix:50-d9 | |||||
| mv_C01B10.1 | |||||
| sjj_C01B10.1 | |||||
| Corresponding_oligo_set | 185299_s_at | ||||
| A_12_P135120 | |||||
| A_12_P135121 | |||||
| Aff_C01B10.1 | |||||
| GPL19516_CGZ0001567 | |||||
| GPL21109_C01B10.1 | |||||
| GPL8304_CE_WBGene00001091_A | |||||
| GPL8673_C01B10_1P00492 | |||||
| Variation (99) | |||||
| Microarray_results | SMD_C01B10.1 | ||||
| 185299_s_at | |||||
| A_12_P135120 | |||||
| A_12_P135121 | |||||
| Aff_C01B10.1 | |||||
| GPL19516_CGZ0001567 | |||||
| GPL21109_C01B10.1 | |||||
| GPL8304_CE_WBGene00001091_A | |||||
| GPL8673_C01B10_1P00492 | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 13 Feb 2014 00:00:00 | WBPerson4025 | |||
| Remark | converted from a CDS to pseudogene. This is likely a transcribed pseudogene from a recent duplication. [tb 20071003] | ||||
| [131015 gw3] Took a look at this. It is a pseudogene because there is a frameshift in the eighth exon. | Curator_confirmed | WBPerson4025 | |||
| [140213 gw3] The two frameshifts occur in exons 4 and 8 of the current pseudogene structure, as given in WormBase. The helicase domain starts in exon 7 and ends in exon 10 of the current pseudogene structure. | Curator_confirmed | WBPerson4025 | |||
| Method | Pseudogene |
