WormBase Tree Display for Gene: WBGene00001091
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| WBGene00001091 | SMap | S_parent | Sequence | C01B10 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | drh-2 | Person_evidence | WBPerson419 | ||||||
| Sequence_name | C01B10.1 | |||||||||
| Molecular_name | C01B10.1 | |||||||||
| Other_name | CELE_C01B10.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | drh-2 | |||||||||
| DB_info | Database | AceView | gene | 4H380 | ||||||
| WormQTL | gene | WBGene00001091 | ||||||||
| NDB | locus_tag | CELE_C01B10.1 | ||||||||
| NCBI | gene | 177426 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 04 Oct 2007 11:45:18 | WBPerson1849 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | drh | |||||||||
| Allele (99) | ||||||||||
| Strain | WBStrain00031732 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Contained_in_operon | CEOP4647 | |||||||||
| Ortholog | WBGene00027855 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Paralog | WBGene00001090 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | drh-2 was identified, along with drh-1, as a gene that can encode a protein with similarity to DExH-box helicases; drh-2, however, is classified by WB as a pseudogene because it has two frameshifts, based on EST and RNASeq alignments; the first frameshift occurs in exon 4 and the second occurs in exon 8 of the current WB gene structure; drh-2 appears to be the first gene in an operon (CEOP4647) followed by drh-1 and nstp-2. | Paper_evidence | WBPaper00005368 | ||||||
| Curator_confirmed | WBPerson1843 | |||||||||
| Date_last_updated | 12 Feb 2014 00:00:00 | |||||||||
| Automated_description | Enriched in intestine; muscle cell; and neurons based on microarray and RNA-seq studies. Is affected by several genes including daf-2; glp-1; and rrf-3 based on proteomic; microarray; and RNA-seq studies. Is affected by twelve chemicals including rotenone; levamisole; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C01B10.1:wp92 | ||||||||
| C01B10.1:wp183 | ||||||||||
| Corresponding_pseudogene | C01B10.1 | |||||||||
| Other_sequence | JI175259.1 | |||||||||
| FG621043.1 | ||||||||||
| Experimental_info | Expr_pattern | Expr3877 | ||||||||
| Drives_construct | WBCnstr00011709 | |||||||||
| Microarray_results | SMD_C01B10.1 | |||||||||
| 185299_s_at | ||||||||||
| A_12_P135120 | ||||||||||
| A_12_P135121 | ||||||||||
| Aff_C01B10.1 | ||||||||||
| GPL19516_CGZ0001567 | ||||||||||
| GPL21109_C01B10.1 | ||||||||||
| GPL8304_CE_WBGene00001091_A | ||||||||||
| GPL8673_C01B10_1P00492 | ||||||||||
| Expression_cluster (103) | ||||||||||
| Interaction | WBInteraction000543336 | |||||||||
| WBInteraction000543408 | ||||||||||
| Map_info | Map | IV | Position | 3.21701 | Error | 0.000976 | ||||
| Positive | Positive_clone | C01B10 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Mapping_data | Multi_point | 4840 | ||||||||
| 4804 | ||||||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00005368 | |||||||||
| WBPaper00024434 | ||||||||||
| WBPaper00027057 | ||||||||||
| WBPaper00031962 | ||||||||||
| WBPaper00032883 | ||||||||||
| WBPaper00035245 | ||||||||||
| WBPaper00042632 | ||||||||||
| WBPaper00044120 | ||||||||||
| WBPaper00044196 | ||||||||||
| WBPaper00046788 | ||||||||||
| Remark | Sequence connection from [Tabara H, Siomi S, Mello CC], [krb 020710] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||||
| Method | Gene |
