WormBase Tree Display for Gene: WBGene00273988

WBGene00273988 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 6
    Name: CGC_name: Ppa-unc-11 From_analysis: Inferred_from_orthology
      Sequence_name: PPA35619
      Molecular_name: PPA35619
        PPA35619.1
        PP74243
      Public_name: Ppa-unc-11
    Species: Pristionchus pacificus
    History: Version_change: 1 24 Nov 2017 16:14:21 WBPerson4055 Event: Created
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-unc-11
        3 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:23 WBPerson1983 Name_change: CGC_name: Ppa-unc-11
        5 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:27 WBPerson1983 Name_change: CGC_name: Ppa-unc-11
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000032 12.4107 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 12.4107 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        14.6573 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        9.02267 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    GO_annotation: 00281528
      00281529
      00281530
      00281531
      00281532
    Ortholog: WBGene00142822 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00161380 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00033023 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00222778 Brugia malayi From_analysis: WormBase-Compara
      WBGene00006751 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00176798 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00211830 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00236948 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g9380 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2311 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4284 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6899 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1874 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20430 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13435 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g336 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9877 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16458 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_06694.g20424 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-11 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold627.g6740 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00111.g4616 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08185 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002185 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08210 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10733 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g18455 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10164000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00062303 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00261583 Strongyloides ratti From_analysis: WormBase-Compara
      chrI_pilon.g578 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00295407 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable 1-phosphatidylinositol binding activity and clathrin binding activity. Predicted to be involved in clathrin coat assembly. Predicted to be located in clathrin-coated vesicle. Is an ortholog of C. elegans unc-11. In C. elegans, unc-11 is involved in several processes, including endocytosis; necroptotic process; and protein localization to postsynaptic membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA35619
    Corresponding_transcript: PPA35619.1
    Other_sequence: Acan_isotig19460
      PTC00299_1
      PPC02567_1
      MCC03384_1
      MHC06963_1
      Acan_isotig00468
      MH09386
      Acan_isotig00465
      SR03507
      SRC04482_1
      FC821823.1
      Acan_isotig00464
      FG584715.1
      FG586873.1
      CR03909
      PT01021
      JI166616.1
      Dviv_isotig29208
      JI470642.1
      FC821212.1
      EX559834.1
      Oden_isotig18668
      BG485923.1
      CRC10493_1
      EX555116.1
      MC00485
      PP01889
      ACC08090_1
      JI166734.1
      OVC09345_1
  Experimental_info: Microarray_results: GPL14372_Probes_56400
      GPL14372_Probes_56402
      GPL14372_Probes_56403
      GPL14372_Probes_56404
      GPL14372_Probes_56405
    Expression_cluster: WBPaper00041207:PP_dauer_up
  Remark: [190208 pad] The CGC name Ppa-unc-11 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-unc-11 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene