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WormBase Tree Display for Gene: WBGene00239897

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Name Class

WBGene00239897SMapS_parentSequenceOVOC_OM1b_119
IdentityVersion2
NameCGC_nameOvo-chn-1From_analysisInferred_from_orthology
Sequence_nameOVOC3088
Molecular_nameOVOC3088
OVOC3088.1
OVP04978
Public_nameOvo-chn-1
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:33WBPerson3111EventImportedMAKER import
224 Jan 2014 16:01:34WBPerson4055Name_changeCGC_nameOvo-chn-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classchn
RNASeq_FPKMWBls:000010111.6929From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
16.6619From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
WBls:000010410.0999From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978164
10.4088From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978161
10.5512From_analysisRNASeq.ovolvulus.WBls:0000104.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978160
11.6197From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978163
11.7661From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978158
12.1453From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978157
12.5959From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978156
12.8928From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978159
13.2422From_analysisRNASeq.ovolvulus.WBls:0000104.control_mean
1.86849From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.SRP056861.SRX978162
27.1568From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450841
4.17106From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529045
51.616From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.ERP001350.ERX200394
6.50683From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450842
7.42316From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450840
7.81085From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529044
WBls:000010712.3661From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010827.8007From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
34.4514From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
40.2556From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
8.69503From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:000066423.5125From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
36.0806From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
48.6486From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
GO_annotation00253840
00253841
OrthologWBGene00191386Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00033483Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00225956Brugia malayiFrom_analysisWormBase-Compara
WBGene00000500Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210287Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00216349Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g9054Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2636Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6217Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17169Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1999Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g6323Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14962Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17712Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5596Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g6122Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00196.g6754Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-chn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20407Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00952.g17032Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07001Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002690Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01816Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22895Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10318200Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00064280Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00278157Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279304Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279311Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00281717Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00255868Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292043Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00240035Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00241341Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00243153Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00247640Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248123Onchocerca volvulusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Is an ortholog of C. elegans chn-1. In C. elegans, chn-1 is involved in several processes, including determination of adult lifespan; egg-laying behavior; and protein ubiquitination.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC3088
Corresponding_transcriptOVOC3088.1
Other_sequenceHG00088
ES566092.1
JI174774.1
Acan_isotig10020
SS01529
SSC00039_1
OOC02115_1
HGC01107_1
FG583187.1
EX561337.1
MC01659
CR00817
PPC11614_1
Tcol_isotig17500
MC03719
PPC03300_1
TS00991
BXC07865_1
CRC07699_1
CR10890
EX540844.1
Dviv_isotig27098
MCC00339_1
ACC05670_1
MC02033
MC01750
PPC19131_1
Dviv_isotig23495
Tcir_isotig04802
NBC00295_1
EX558281.1
TSC04264_1
HG00316
ACC10430_1
MC01808
EV851586.1
Hbac_isotig01966
EX827885.1
CBC01581_1
EX563108.1
NB07949
EX556322.1
DVC02495_1
Oden_isotig19811
MethodGene