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WormBase Tree Display for CDS: OVOC3088

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Name Class

OVOC3088SMapS_parentSequenceOVOC_OM1b_119
StructureSource_exons192
501633
10381213
14331640
18782090
34653512
DB_infoDB_remarkOVO-CHN-1 protein; contains similarity to Pfam domains PF04564 (U-box domain), PF12895 (Anaphase-promoting complex, cyclosome, subunit 3), PF18391 (CHIP N-terminal tetratricopeptide repeat domain); contains similarity to Interpro domains IPR041312 (CHIP, N-terminal tetratricopeptide repeat domain), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR003613 (U-box domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
OriginFrom_laboratoryMGM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00239897
Corresponding_transcriptOVOC3088.1
Corresponding_proteinOVP04978
Brief_identificationE3 ubiquitin-protein ligase CHIP homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:000010712.3661From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010834.4514From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
40.2556From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
8.69503From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:000066423.5125From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
48.6486From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Methodcurated