WormBase Tree Display for CDS: OVOC3088
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OVOC3088 | SMap | S_parent | Sequence | OVOC_OM1b_119 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 92 | |||
501 | 633 | |||||
1038 | 1213 | |||||
1433 | 1640 | |||||
1878 | 2090 | |||||
3465 | 3512 | |||||
DB_info | DB_remark | OVO-CHN-1 protein; contains similarity to Pfam domains PF04564 (U-box domain), PF12895 (Anaphase-promoting complex, cyclosome, subunit 3), PF18391 (CHIP N-terminal tetratricopeptide repeat domain); contains similarity to Interpro domains IPR041312 (CHIP, N-terminal tetratricopeptide repeat domain), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR003613 (U-box domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00239897 | ||||
Corresponding_transcript | OVOC3088.1 | |||||
Corresponding_protein | OVP04978 | |||||
Brief_identification | E3 ubiquitin-protein ligase CHIP homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 12.3661 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 34.4514 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
40.2556 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
8.69503 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 23.5125 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
48.6486 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Method | curated |