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WormBase Tree Display for Gene: WBGene00159574

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Name Class

WBGene00159574SMapS_parentSequenceCbre_Contig147
IdentityVersion1
NameSequence_nameCBN20849
Molecular_nameCBN20849
CBN20849.1
CN02404
Public_nameCBN20849
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:52WBPerson4055EventImportedfrom NGASP
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000215.2482From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
18.8663From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
20.7048From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
23.2826From_analysisRNASeq.brenneri.WBls:0000002.control_median
25.8605From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
30.7213From_analysisRNASeq.brenneri.WBls:0000002.control_mean
41.4454From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
42.1287From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
58.9474From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
84.0112From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
45.0014From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
90.0027From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:0000024119.377From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
132.341From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
369.204From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
398.543From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
492.983From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003840.3081From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
40.5969From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
40.8857From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041102.399From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
120.742From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
17.8863From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
30.0766From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
31.3149From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
31.5196From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
32.6876From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
34.54From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
36.152From_analysisRNASeq.brenneri.WBls:0000041.control_median
37.7639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
42.3675From_analysisRNASeq.brenneri.WBls:0000041.control_mean
42.6313From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
43.5437From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
45.8872From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
51.9067From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
54.9808From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
WBls:000010134.54From_analysisRNASeq.brenneri.total_over_all_stages.control_median
37.2996From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00002981Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00062492Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00128015Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
CBOVI.g10931Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14560Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g16135Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12850Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6902Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15879Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16138Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18950Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g500Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1420Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-lgg-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7992Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00007.g503Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12859Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014019Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02899Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13555Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g24137Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40308900Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00028316Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00227761Brugia malayiFrom_analysisWormBase-Compara
WBGene00268385Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g11720Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241026Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00275740Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266551Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288869Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00153484Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00148382Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00158132Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Autophagy protein Atg8 ubiquitin like; Autophagy protein Atg8 ubiquitin-like; and Ubiquitin-like domain superfamily. Is an ortholog of C. elegans lgg-2. In C. elegans, lgg-2 is involved in cellular response to toxic substance; defense response to other organism; and positive regulation of autophagosome maturation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN20849
Corresponding_transcriptCBN20849.1
Other_sequenceCBC03141_1
Tcir_isotig11797
EX539758.1
BXC03668_1
EW743639.1
Acan_isotig11554
OOC02802_1
CD374671.1
JI215447.1
EW741737.1
FE915311.1
PPC17553_1
Tcol_contig16772
ACC17436_1
ASC35473_1
CRC04152_1
EX555704.1
CJC08815_1
TDC01994_1
HC00538
JI178315.1
WBC00558_1
JI166056.1
ACC00150_1
EW744593.1
EW741148.1
BMC05500_1
Tcir_isotig12609
CD455772.1
FG580624.1
JO468860.1
JI181324.1
HCC02616_1
Oden_isotig20963
CB036438.1
Experimental_infoMicroarray_resultsGPL14142_CBN14759_325-384_0.839_7_A
MethodGene