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WormBase Tree Display for Gene: WBGene00139038

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Name Class

WBGene00139038SMapS_parentSequenceCbre_Contig1270
IdentityVersion2
NameCGC_nameCbn-unc-5.2From_analysisInferred_from_orthology
Sequence_nameCBN00313
Molecular_nameCBN00313
CBN00313.1
CN04479
Public_nameCbn-unc-5.2
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:50WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-unc-5.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000020.440903From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0.591484From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
0.728176From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0.860051From_analysisRNASeq.brenneri.WBls:0000002.control_mean
0.864403From_analysisRNASeq.brenneri.WBls:0000002.control_median
1.00063From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
1.10782From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
1.35119From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
1.63686From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
1.74345From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.90757From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
5.81514From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240.9From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
1.43634From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
1.56951From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
1.57517From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
1.88725From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
WBls:00000383.69294From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
3.73636From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
3.77977From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:00000410.672498From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
0.860146From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
0.9991From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
1.06892From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
1.11339From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
1.3574From_analysisRNASeq.brenneri.WBls:0000041.control_median
1.6014From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
1.75666From_analysisRNASeq.brenneri.WBls:0000041.control_mean
1.85877From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
1.90075From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
2.39249From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
2.95932From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
3.17956From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
4.33608From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
5.1642From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
WBls:00001011.10782From_analysisRNASeq.brenneri.total_over_all_stages.control_median
1.61274From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00202387
00202388
00202389
00202390
OrthologWBGene00006745Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00039055Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00063989Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00074874Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00211593Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g10748Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4903Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14877Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6416Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g6417Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6503Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21532Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g3880Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3693Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11764Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g28928Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29434Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24123Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00068.g3279Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold470.g1638Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01223.g19372Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19739Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013564Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10441Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1389Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40329700Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00221992Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g10464Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241016Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277056Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266557Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00293765Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00159503Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable netrin receptor activity. Predicted to be involved in netrin-activated signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans unc-5. In C. elegans, unc-5 is involved in several processes, including axon guidance; regulation of neuron projection development; and sex differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN00313
Corresponding_transcriptCBN00313.1
Other_sequenceJI459463.1
CJC11776_1
Experimental_infoMicroarray_resultsGPL14142_CBN00313_2105-2164_0.919_7_A
MethodGene