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WormBase Tree Display for Gene: WBGene00136554

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Name Class

WBGene00136554SMapS_parentSequenceCjap.Contig17117
IdentityVersion3
NameCGC_nameCjp-pdzd-8From_analysisInferred_from_orthology
Sequence_nameCJA17351
Molecular_nameCJA17351
CJA17351.1
JA52692
Public_nameCjp-pdzd-8
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedNGASP import
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
304 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameCjp-pdzd-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpdzd
RNASeq_FPKMWBls:000000423.7099From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002737.5573From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003822.8765From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
23.7241From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
24.5716From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004129.0796From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
34.8991From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
35.1424From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
36.7554From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
40.3865From_analysisRNASeq.japonica.WBls:0000041.control_mean
41.1265From_analysisRNASeq.japonica.WBls:0000041.control_median
45.4976From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
46.4965From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
46.8994From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
48.322From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
WBls:000010133.216From_analysisRNASeq.japonica.total_over_all_stages.control_mean
35.1424From_analysisRNASeq.japonica.total_over_all_stages.control_median
GO_annotation00200535
00200536
00200537
OrthologWBGene00008274Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WBGene00040433Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00063872Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00076171Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00192741Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00269364Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11629Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10422Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g12604Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g12606Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4073Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4075Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18293Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18295Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12995Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12997Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g210Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g212Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1239Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g1241Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20445Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_11719.g23387Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15483.g25052Caenorhabditis angariaFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13665Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16983Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00092903Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00241500Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267100Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289413Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00137694Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in mitochondrial calcium ion homeostasis and mitochondrion-endoplasmic reticulum membrane tethering. Predicted to be located in mitochondria-associated endoplasmic reticulum membrane. Is an ortholog of C. elegans pdzd-8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA17351
Corresponding_transcriptCJA17351.1
Other_sequenceDviv_isotig33321
FC544963.1
CR09864
CR04805
CRC05095_1
FC545004.1
EX535999.1
ACC18894_1
EX545607.1
JI483073.1
Oden_isotig12902
CRC08562_1
JO470720.1
Oden_isotig12901
Dviv_isotig27124
Dviv_isotig05869
EX547759.1
Experimental_infoExpr_patternExpr1077712
Microarray_resultsGPL14145_CJA21134_379-438_0.954_1_A
MethodGene