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WormBase Tree Display for Gene: WBGene00040433

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Name Class

WBGene00040433SMapS_parentSequencecb25.fpc4260b
IdentityVersion2
NameCGC_nameCbr-pdzd-8From_analysisInferred_from_orthology
Sequence_nameCBG21734
Molecular_nameCBG21734a
CBG21734a.1
CBP47267
CBG21734b
CBP43994
CBG21734b.1
Other_nameCBG_21734Accession_evidenceNDBHE600966
Public_nameCbr-pdzd-8
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
204 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameCbr-pdzd-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpdzd
AlleleWBVar00031947
WBVar00031952
RNASeq_FPKMWBls:000000219.947From_analysisRNASeq.briggsae.WBls:0000002.control_mean
24.4994From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
27.5463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.79516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
19.8154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
19.9141From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.1574From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000326.1655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
29.0342From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
31.9029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
31.9439From_analysisRNASeq.briggsae.WBls:0000003.control_mean
37.7634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000419.1304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
19.8957From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
20.6609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
17.9593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
19.732From_analysisRNASeq.briggsae.WBls:0000004.control_mean
20.4317From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.4778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.4819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.36735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.36884From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.40603From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.7358From_analysisRNASeq.briggsae.WBls:0000027.control_mean
12.4254From_analysisRNASeq.briggsae.WBls:0000027.control_median
18.725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003518.3514From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.4726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
15.8439From_analysisRNASeq.briggsae.WBls:0000038.control_mean
15.8931From_analysisRNASeq.briggsae.WBls:0000038.control_median
19.3136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
21.9054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.68391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004135.07From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
39.331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
39.3921From_analysisRNASeq.briggsae.WBls:0000041.control_median
39.4532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
39.8666From_analysisRNASeq.briggsae.WBls:0000041.control_mean
45.612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
33.4655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
37.2698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
38.3004From_analysisRNASeq.briggsae.WBls:0000041.control_median
38.3669From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006320.0641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
20.3771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
20.8209From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
21.3869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
21.685From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.776From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.1039From_analysisRNASeq.briggsae.WBls:0000063.control_median
22.0508From_analysisRNASeq.briggsae.WBls:0000063.control_mean
23.88From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010120.0641From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.4624From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
20.4044From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.6631From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143843
00143844
00143845
Ortholog (49)
Structured_descriptionAutomated_descriptionPredicted to be involved in mitochondrial calcium ion homeostasis and mitochondrion-endoplasmic reticulum membrane tethering. Predicted to be located in mitochondria-associated endoplasmic reticulum membrane. Is an ortholog of C. elegans pdzd-8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21734a
CBG21734b
Corresponding_CDS_historyCBG21734:bp255
Corresponding_transcriptCBG21734a.1
CBG21734b.1
Other_sequence (30)
Experimental_infoExpr_patternExpr1063112
Microarray_resultsGPL8303_CB6_WBGene00040433_A
GPL8303_CB6_WBGene00040433_B
GPL14143_CBG21734_2809-2868_0.664_291_C
GPL14143_CBG21734_3051-3110_0.867_29_B
GPL14143_CBG21734_3814-3873_0.942_1_A
MethodGene