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WormBase Tree Display for Gene: WBGene00120288

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Name Class

WBGene00120288SMapS_parentSequenceCjap.Contig18142
IdentityVersion2
NameCGC_nameCjp-lim-4From_analysisInferred_from_orthology
Sequence_nameCJA01084
Molecular_nameCJA01084
CJA01084.1
JA52667
Public_nameCjp-lim-4
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:20WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-lim-4
229 Jul 2011 11:13:36WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlim
RNASeq_FPKMWBls:000000412.8239From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000274.23336From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.52076From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
1.54503From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
1.5693From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.283378From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.380417From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.38653From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.519147From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.631584From_analysisRNASeq.japonica.WBls:0000041.control_mean
0.651382From_analysisRNASeq.japonica.WBls:0000041.control_median
0.783617From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.818072From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.867792From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
1.01372From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
WBls:00001010.818072From_analysisRNASeq.japonica.total_over_all_stages.control_median
1.93846From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00187446
OrthologWBGene00002987Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00034847Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00051912Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00098361Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00227603Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2483Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3313Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12595Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10413Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g459Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23296Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g359Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20491Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26580Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22445Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00457.g11076Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lim-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18236Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00003.g236Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00761Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024170Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13527Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1562Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0264100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18830Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238705Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00203796Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00255929Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292218Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00130195Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00127225Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00125552Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00134535Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00123782Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00128518Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00132017Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00132456Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00137173Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00206731Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00215878Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans lim-4. In C. elegans, lim-4 is involved in several processes, including cell differentiation; positive regulation of transcription by RNA polymerase II; and serotonin biosynthetic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA01084
Corresponding_transcriptCJA01084.1
Other_sequenceJI170552.1
ACC02215_1
EY458469.1
EY467710.1
OF00872
OFC00496_1
JI481697.1
Oden_isotig21465
TMC01536_1
Acan_isotig11140
JI476528.1
TM01828
EY466079.1
EY463566.1
Experimental_infoExpr_patternExpr1072075
Microarray_resultsGPL14145_CJA01084_528-587_0.882_11_C
GPL14145_CJA01084_637-696_0.905_7_B
GPL14145_CJA01084_784-843_0.940_2_A
MethodGene