WormBase Tree Display for Gene: WBGene00114421

WBGene00114421 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 6
    Name: CGC_name: Ppa-sdn-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA24867
      Molecular_name: PPA24867
        PPA24867.1
        PP69983
      Other_name: GENEPREDICTION_SNAP300000081725
        GENEPREDICTION_SNAP300000081726
        UMM-S196-26.77 Person_evidence: WBPerson606
      Public_name: Ppa-sdn-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00114422
        3 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Ppa-sdn-1
        5 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Ppa-sdn-1
      Acquires_merge: WBGene00114422
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sdn
    RNASeq_FPKM: WBls:0000032 10.0393 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        3.34643 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    GO_annotation: 00184512
    Ortholog: WBGene00144892 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00027161 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00229049 Brugia malayi From_analysis: WormBase-Compara
      WBGene00004749 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00135535 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00240036 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g11944 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13481 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3121 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5496 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15987 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25015 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2061 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g19409 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20314 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00168.g6103 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-sdn-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13781 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00039.g2133 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01293 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023610 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14344 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8352 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0073920 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00058435 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrX_pilon.g19926 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00255835 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289137 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in membrane. Is an ortholog of C. elegans sdn-1. In C. elegans, sdn-1 is involved in embryo development; epidermis morphogenesis; and nematode larval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA24867
    Corresponding_transcript: PPA24867.1
    Other_sequence: PPC00867_1
      ACC30571_1
      JI168753.1
      EH005328.1
      Dviv_isotig11747
      XIC05508_1
      CRC02040_1
      DVC02738_1
      EV854084.1
      Oden_isotig22891
      HCC07320_1
      PPC06928_1
      PPC09890_1
      PP01631
      HC05565
      XI04872
      Hbac_isotig01923
      Dviv_isotig11748
      AIC00314_1
      EY472194.1
  Experimental_info: Microarray_results: GPL14372_Probes_1278
      GPL14372_Probes_37274
      GPL14372_Probes_37275
      GPL14372_Probes_37276
      GPL14372_Probes_37277
  Remark: [190208 pad] The CGC name Ppa-sdn-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-sdn-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene