WormBase Tree Display for Gene: WBGene00072055

WBGene00072055 SMap: S_parent: Sequence: Crem_Contig83
  Identity: Version: 4
    Name: CGC_name: Cre-lfe-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE19305
      Molecular_name: CRE19305
        CRE19305.1
        RP28695
      Other_name: cr01.sctg305.wum.9
        cr01.sctg305.wum.9.2
      Public_name: Cre-lfe-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:29 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:41 WBPerson2970 Name_change: CGC_name: Cre-lfe-2
        3 03 Jul 2008 11:46:35 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE19305
                Other_name: cr01.sctg305.wum.9
        4 03 Jul 2008 11:48:41 WBPerson4055 Event: Acquires_merge: WBGene00072056
              Name_change: Other_name: cr01.sctg305.wum.9.2
      Acquires_merge: WBGene00072056
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lfe
    RNASeq_FPKM: WBls:0000004 0.727456 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        0.988453 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        1.24945 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 11.482 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
        11.9442 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
        13.2153 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
        15.0296 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
        16.6655 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
        17.3044 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
        17.4664 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
        17.9507 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
        18.2036 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
        18.5268 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
        19.4547 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
        20.1608 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
        20.3865 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
        20.7136 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
        21.2586 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
        21.813 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
        21.8206 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
        22.1969 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
        23.2349 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
        23.3233 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
        23.4481 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
        24.0116 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
        24.0255 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
        24.0277 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
        24.3227 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
        24.6157 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
        24.7221 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
        24.7753 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
        25.2546 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
        25.2779 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
        26.1125 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
        26.6588 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
        27.2634 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
        27.3595 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
        27.6445 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
        27.6859 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
        28.4279 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
        29.3981 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
        29.3999 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
        30.0815 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
        30.7688 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
        31.0494 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
        31.201 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
        31.4537 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
        32.6072 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
        32.9792 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
        33.3042 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
        33.93 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
        34.4874 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
        35.7955 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
        5.86428 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
        9.31847 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
        9.36709 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
      WBls:0000027 11.0559 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        12.1918 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        12.2619 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        13.4678 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        16.4503 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        7.79309 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 4.37324 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        6.33477 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        6.35813 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        8.27294 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 11.4893 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        13.8941 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        14.0011 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        16.299 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        17.9295 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        22.1823 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        7.44164 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        8.66475 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 11.6715 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
        12.1575 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        13.034 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        14.0832 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        15.1324 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        15.6991 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        20.0962 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        20.1882 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        23.3171 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        24.7222 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        7.73583 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        8.93588 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
      WBls:0000101 11.5804 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        11.9517 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00165903
      00165904
    Ortholog: WBGene00002979 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032069 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00090982 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00129057 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00190490 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00223062 Brugia malayi From_analysis: WormBase-Compara
      WBGene00237316 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g9374 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2130 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11350 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13104 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10682 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g484 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15384 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8009 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22572 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17918 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00938.g15027 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lfe-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9789 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00432.g11288 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07521 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000301 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10597 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11105 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10256200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g826 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00262605 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285340 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00064576 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00069020 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00077247 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00085847 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable kinase activity. Predicted to be involved in inositol phosphate biosynthetic process. Is an ortholog of C. elegans lfe-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE19305
    Corresponding_transcript: CRE19305.1
    Other_sequence: FC549037.1
      FG970926.1
      FK801079.1
      FK800732.1
      FG977753.1
      TMC04198_1
      FC554316.1
      FF681099.1
      FG979491.1
      FG979976.1
      FG977390.1
      FC815222.1
      CR09808
      Dviv_isotig18989
      HBC08274_1
      FF678422.1
      FE928651.1
      FK808635.1
      MIC03804_1
      FF679176.1
      FF681583.1
      FG978213.1
      MC03468
      OF00194
      FG971328.1
      HGC05663_1
      HBC25107_1
      Tcol_isotig17568
      FG979040.1
      FF680764.1
      JI169738.1
      MI04588
      FG974723.1
      FK805568.1
      EX912470.1
      MI04872
      EY470357.1
      FK804533.1
      MC05148
      FK801654.1
      FK802435.1
      FK803749.1
      FK801179.1
      TM00260
      FC549974.1
      FE927256.1
      HGC07005_1
      FG972060.1
      TV00576
      FG976449.1
      SSC01902_1
      DI01124
      HBC07100_1
      XI03043
      HG06535
      FG972307.1
      CBC01556_1
      EX912369.1
      Name_isotig01146
      HG01545
      FK803036.1
      FG978396.1
      HGC00688_1
      FG971824.1
      JI466798.1
      FF679134.1
      TX02105
      Hbac_isotig00323
      FF681337.1
      HBC11586_1
      FG975901.1
      FK805217.1
      FF680913.1
      FG980196.1
      FF681396.1
      EY463207.1
      Dviv_isotig18990
      Dviv_isotig19050
      BMC17114_1
      BE202336.1
      FK802825.1
      FG972951.1
      FC809866.1
      FK804519.1
      JI169547.1
      FG973790.1
      XI03999
      FK802345.1
      XIC02407_1
      SSC00103_1
      FF680793.1
      FK801805.1
      Tcir_isotig16570
      Dviv_isotig19049
      TMC04725_1
      BUC01869_1
      MA00019
      FK801252.1
      SS01453
      FG971140.1
      AI511532.1
      HBC00841_1
      FG978834.1
      FK807691.1
      FK808181.1
      TVC00709_1
      FK809606.1
      FK806577.1
      Oden_isotig18870
      FK806512.1
      TV00126
      ACC01678_1
      JI468317.1
      Hbac_isotig00322
      EY458289.1
      FK801078.1
      FG980535.1
      FG979142.1
      ES743583.1
      BM00101
      FF681021.1
      TMC04244_1
      ACC12743_1
      EY471976.1
      Dviv_isotig26242
      FG975408.1
      SRC00583_1
      Acan_isotig08134
      JI169578.1
      FK807650.1
      TCC02512_1
      FC546822.1
      FG974503.1
      MCC04127_1
      FG974326.1
  Experimental_info: Expr_pattern: Expr1100406
    Microarray_results: GPL14146_CRE19305_1230-1289_0.841_36_B
      GPL14146_CRE19305_1264-1323_0.956_1_A
      GPL14146_CRE19305_812-871_0.892_16_C
  Method: Gene