WormBase Tree Display for Gene: WBGene00045401
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WBGene00045401 | SMap | S_parent | Sequence | T26F2 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | eol | |||||
Allele (35) | ||||||
Possibly_affected_by | WBVar02157243 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation (20) | ||||||
Ortholog (50) | ||||||
Paralog (11) | ||||||
Structured_description | Concise_description | eol-1 encodes a homolog of vertebrate DXO/Dom3Z, a decapping and exoribonuclease protein that functions in pre-mRNA quality control; in C. elegans, EOL-1 activity is required in the URX sensory neurons for inhibition of olfactory learning; mouse Dom3Z can functionally substitute for C. elegans EOL-1, demonstrating conservation of activity for these proteins; in adult hermaphrodites, an eol-1::gfp promoter fusion is expressed in several head and tail neurons, including URX, AVF, and PQR, and in reproductive tissues. | Paper_evidence | WBPaper00045830 | ||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 22 Dec 2014 00:00:00 | |||||
Automated_description | Predicted to enable 5'-3' exonuclease activity; mRNA 5'-diphosphatase activity; and mRNA binding activity. Involved in regulation of olfactory learning. Predicted to be located in cytosol and nucleus. Expressed in AVF; oxygen sensory neurons; and reproductive system. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | T26F2.3 | ||||
Corresponding_CDS_history | T26F2.3:wp195 | |||||
T26F2.3:wp215 | ||||||
Corresponding_transcript | T26F2.3.1 | |||||
T26F2.3.2 | ||||||
Other_sequence | CBC10792_1 | |||||
Associated_feature | WBsf234889 | |||||
Experimental_info | RNAi_result | WBRNAi00054220 | Inferred_automatically | RNAi_primary | ||
WBRNAi00019270 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr12008 | |||||
Expr15788 | ||||||
Expr1019371 | ||||||
Expr1157766 | ||||||
Expr2011336 | ||||||
Expr2029572 | ||||||
Drives_construct | WBCnstr00020068 | |||||
WBCnstr00020069 | ||||||
WBCnstr00020070 | ||||||
WBCnstr00023236 | ||||||
Construct_product | WBCnstr00020068 | |||||
WBCnstr00023236 | ||||||
WBCnstr00042520 | ||||||
Microarray_results (16) | ||||||
Expression_cluster (290) | ||||||
Map_info | Map | V | Position | 5.86927 | ||
Positive | Positive_clone | T26F2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00045830 | |||||
WBPaper00051856 | ||||||
WBPaper00060692 | ||||||
WBPaper00061319 | ||||||
WBPaper00064708 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |