WormBase Tree Display for Gene: WBGene00039598

WBGene00039598 SMap: S_parent: Sequence: cb25.fpc4206a
  Identity: Version: 2
    Name: CGC_name: Cbr-tig-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20656
      Molecular_name: CBG20656
        CBG20656.1
        CBP43705
      Other_name: CBG_20656 Accession_evidence: NDB HE600991
      Public_name: Cbr-tig-3
    DB_info: Database: NDB locus_tag CBG_20656
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:05 WBPerson2970 Name_change: CGC_name: Cbr-tig-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tig
    RNASeq_FPKM: WBls:0000002 0.142672 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.165727 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.262289 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.051558 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.108642 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.119893 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.096864 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.193727 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.105183 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.255005 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.451352 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.524765 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 0.106801 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.143789 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.180778 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        0.185563 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0.237065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        0.454673 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        0.975381 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 0.037038 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.111114 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.055557 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.055558 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.111119 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.13961 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.043806 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.087612 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.281116 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        1.03685 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 0.162829 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.218094 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.357554 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.497013 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.721969 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.00994 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.631626 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.76624 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.788663 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        1.07786 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.324116 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.43664 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.484454 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.594972 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.06654 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.231281 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.380378 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.442258 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.13961 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.277563 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.15122 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.299176 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143072
      00143073
    Ortholog: WBGene00021594 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057532 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00162101 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00135816 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP21.g15433 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10543 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16840 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17185 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27243 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3620 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6511 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2569 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5055 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00643.g13077 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-tig-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11295 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_23217 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005849 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g22201 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g22464 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20077900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00223175 Brugia malayi From_analysis: WormBase-Compara
      chrII_pilon.g6681 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243557 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00257942 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00264641 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288631 Trichuris muris From_analysis: WormBase-Compara
      WBGene00299806 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00030533 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038298 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040440 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042912 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable growth factor activity. Predicted to be located in extracellular region. Is an ortholog of C. elegans tig-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20656
    Corresponding_CDS_history: CBG20656:bp194
      CBG20656:bp255
    Corresponding_transcript: CBG20656.1
  Experimental_info: Expr_pattern: Expr1051256
    Microarray_results: GPL8303_CB6_WBGene00039598_A
      GPL8303_CB6_WBGene00039598_B
      GPL14143_CBG20656_12-71_0.853_10_C
      GPL14143_CBG20656_119-178_0.787_34_B
      GPL14143_CBG20656_604-663_0.842_18_A
  Method: Gene