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WormBase Tree Display for Gene: WBGene00029152

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Name Class

WBGene00029152SMapS_parentSequencecb25.fpc0305a
IdentityVersion2
NameCGC_nameCbr-etr-1From_analysisInferred_from_orthology
Sequence_nameCBG06972
Molecular_nameCBG06972
CBG06972.1
CBP44468
Other_nameCBG_06972Accession_evidenceNDBHE600960
Public_nameCbr-etr-1
DB_infoDatabaseNDBlocus_tagCBG_06972
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-etr-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classetr
RNASeq_FPKMWBls:000000257.0775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
60.6907From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
62.3622From_analysisRNASeq.briggsae.WBls:0000002.control_mean
69.3183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
102.531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
65.0045From_analysisRNASeq.briggsae.WBls:0000002.control_median
72.4044From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000382.7684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
90.9581From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
99.1478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
84.3524From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
88.7562From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004103.003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
108.373From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
113.744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
103.076From_analysisRNASeq.briggsae.WBls:0000004.control_mean
126.871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
78.1207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
93.6427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:000002430.1542From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
30.2649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
34.0821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
40.3985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
52.9047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
55.4961From_analysisRNASeq.briggsae.WBls:0000024.control_mean
56.1087From_analysisRNASeq.briggsae.WBls:0000024.control_median
59.3127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
69.3683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
32.0487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
33.8848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
39.4368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:000002717.2304From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.8287From_analysisRNASeq.briggsae.WBls:0000027.control_mean
31.18From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.07576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
24.2052From_analysisRNASeq.briggsae.WBls:0000027.control_median
28.0328From_analysisRNASeq.briggsae.WBls:0000027.control_mean
58.6451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003583.8868From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.0626From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
33.2262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
35.8859From_analysisRNASeq.briggsae.WBls:0000038.control_mean
38.7937From_analysisRNASeq.briggsae.WBls:0000038.control_median
44.3612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
50.8936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004136.3191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
73.6474From_analysisRNASeq.briggsae.WBls:0000041.control_mean
83.2135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
84.7533From_analysisRNASeq.briggsae.WBls:0000041.control_median
86.293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
88.7641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
41.8397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
43.4349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
63.3107From_analysisRNASeq.briggsae.WBls:0000041.control_mean
63.3242From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006326.9393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
28.4231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
33.3858From_analysisRNASeq.briggsae.WBls:0000063.control_mean
33.7353From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
34.2969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
43.5343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
34.0161From_analysisRNASeq.briggsae.WBls:0000063.control_median
34.5867From_analysisRNASeq.briggsae.WBls:0000063.control_mean
40.5911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010150.8936From_analysisRNASeq.briggsae.total_over_all_stages.control_median
53.4541From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
54.9911From_analysisRNASeq.briggsae.total_over_all_stages.control_median
58.4263From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132602
00132603
OrthologWBGene00001340Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00141511Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00135936Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00073458Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g7809Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5668Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17301Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18357Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1666Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g855Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16105Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23654Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g23769Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22531Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-etr-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold605.g5590Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00305.g9086Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00305.g9087Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05852Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_007807Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12507Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15387Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20003810Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_20003820Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g3058Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241259Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00106277Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00286147Trichuris murisFrom_analysisWormBase-Compara
WBGene00286480Trichuris murisFrom_analysisWormBase-Compara
WBGene00301904Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00024253Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025293Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026137Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027916Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028531Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029486Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032646Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033266Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034128Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034854Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035310Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041768Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Is an ortholog of C. elegans etr-1. In C. elegans, etr-1 is involved in determination of adult lifespan.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06972
Corresponding_CDS_historyCBG06972:bp194
CBG06972:bp255
Corresponding_transcriptCBG06972.1
Other_sequenceDviv_isotig04676
FC539270.1
ACC32580_1
CBC02887_1
EY461126.1
Dviv_isotig20044
ACC25693_1
GPC01527_1
Name_isotig09158
CSC00679_1
CBC14550_1
Dviv_isotig04671
MH01594
Hbac_isotig05922
ACC09872_1
MHC10922_1
MHC01340_1
JI168867.1
Acan_isotig04167
CGC00655_1
ACC13691_1
JK314792.1
Dviv_isotig20045
Dviv_isotig04668
EY464257.1
MIC08822_1
JI170332.1
FC555102.1
Dviv_isotig04673
EX542395.1
Acan_isotig04166
FD515515.1
HG10311
EY466518.1
JI473835.1
MHC01340_2
JI168553.1
EY473112.1
Dviv_isotig04675
JI481089.1
HGC00100_1
EY473150.1
Oden_isotig11716
MH00883
EY464230.1
FC544048.1
Hbac_isotig07358
Tcir_isotig13489
Experimental_infoExpr_patternExpr1058850
Microarray_resultsGPL8303_CB6_WBGene00029152_A
GPL8303_CB6_WBGene00029152_B
GPL14143_CBG06972_1702-1761_0.803_1_B
GPL14143_CBG06972_1749-1808_0.744_68_C
GPL14143_CBG06972_1852-1911_0.798_9_A
MethodGene