WormBase Tree Display for Gene: WBGene00027755

WBGene00027755 SMap: S_parent: Sequence: cb25.fpc0106
  Identity: Version: 2
    Name: CGC_name: Cbr-skr-19 From_analysis: Inferred_from_orthology
      Sequence_name: CBG05260
      Molecular_name: CBG05260
        CBG05260.1
        CBP15307
      Other_name: CBG_05260 Accession_evidence: NDB HE601042
      Public_name: Cbr-skr-19
    DB_info: Database: NDB locus_tag CBG_05260
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:57 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-skr-19
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: skr
    Allele: WBVar00110198
    RNASeq_FPKM: WBls:0000002 21.1799 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        22.5226 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        23.6761 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        27.3257 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        16.6211 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        21.8512 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        21.9123 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 21.9794 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        28.7485 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        35.5176 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        19.5785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        25.6918 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 23.3883 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        24.8049 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        26.2215 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        27.8583 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        28.186 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        29.591 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        42.3011 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 15.1508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        20.1374 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        32.4583 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        34.9036 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        35.7004 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        51.2634 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        53.0628 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        5.99762 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
        8.7679 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        13.3344 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        32.3063 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        38.4047 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 13.6251 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        15.5431 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        20.5468 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        4.78548 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        18.045 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        19.6066 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        37.5508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 41.1619 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 15.8168 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        16.2777 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        30.7303 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        31.1604 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        45.1829 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        47.364 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 18.2367 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        20.029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        22.1383 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        24.2477 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        24.8801 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        37.0069 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        27.8543 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        28.1765 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        32.1052 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        35.5002 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 11.6569 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        1.47639 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        5.02512 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        5.39557 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        6.59673 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        31.5773 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        5.99615 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        9.45048 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 20.5468 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        22.3819 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        22.251 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        24.2198 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00131203
    Ortholog: WBGene00004825 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058756 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00157543 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00120779 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP26.g1037 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14143 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23023 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g12474 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP40.g6982 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-skr-19 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10118 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00196.g6777 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01921 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_025402 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrX_pilon.g20366 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00023862 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00023875 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00025289 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026551 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027754 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028175 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030607 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030707 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030782 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030783 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032207 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033810 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033811 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035257 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035258 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035483 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035793 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00303292 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in ubiquitin-dependent protein catabolic process. Is an ortholog of C. elegans skr-19. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG05260
    Corresponding_CDS_history: CBG05260:bp194
    Corresponding_transcript: CBG05260.1
    Other_sequence: CBC02057_1
  Experimental_info: Expr_pattern: Expr1057016
    Microarray_results: GPL8303_CB6_WBGene00027755_A
      GPL8303_CB6_WBGene00027755_C
      GPL8303_CB6_WBGene00027755_D
      GPL8303_CB6_WBGene00027755_E
      GPL14143_CBG05260_9-68_0.868_1_A
      GPL14143_CBG05260_106-165_0.452_78_B
      GPL14143_CBG05260_192-251_0.645_22_C
    Expression_cluster: WBPaper00058955:heatshock_upregulated_CBG
  Method: Gene