WormBase Tree Display for Gene: WBGene00004825
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| WBGene00004825 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R12H7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | skr-19 | Person_evidence | WBPerson322 | |||||
| Sequence_name | R12H7.3 | ||||||||
| Molecular_name | R12H7.3 | ||||||||
| R12H7.3.1 | |||||||||
| CE45800 | |||||||||
| Other_name | CELE_R12H7.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | skr-19 | ||||||||
| DB_info | Database | AceView | gene | XN842 | |||||
| WormQTL | gene | WBGene00004825 | |||||||
| WormFlux | gene | WBGene00004825 | |||||||
| NDB | locus_tag | CELE_R12H7.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004825|UniProtKB=G5EC92 | |||||||
| family | PTHR11165 | ||||||||
| NCBI | gene | 181446 | |||||||
| RefSeq | protein | NM_077792.8 | |||||||
| TREEFAM | TREEFAM_ID | TF300142 | |||||||
| TrEMBL | UniProtAcc | G5EC92 | |||||||
| UniProt_GCRP | UniProtAcc | G5EC92 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499519 | |||||||||
| WBVar01499888 | |||||||||
| WBVar01499710 | |||||||||
| WBVar00068989 | |||||||||
| WBVar01200023 | |||||||||
| WBVar00521377 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00011347 | ||||||||
| 00011348 | |||||||||
| 00011349 | |||||||||
| 00011350 | |||||||||
| 00011351 | |||||||||
| 00113231 | |||||||||
| Contained_in_operon | CEOPX116 | ||||||||
| Ortholog (23) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | The skr-19 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-19(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | |||||
| WBPaper00005129 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R12H7.3 | |||||||
| Corresponding_CDS_history | R12H7.3:wp223 | ||||||||
| Corresponding_transcript | R12H7.3.1 | ||||||||
| Other_sequence | AF440518 | ||||||||
| CBC02057_1 | |||||||||
| Associated_feature | WBsf671190 | ||||||||
| WBsf238107 | |||||||||
| WBsf238108 | |||||||||
| WBsf238109 | |||||||||
| WBsf238110 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1025571 | ||||||||
| Expr1032400 | |||||||||
| Expr1155524 | |||||||||
| Expr2015846 | |||||||||
| Expr2034079 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction | WBInteraction000216243 | ||||||||
| WBInteraction000227307 | |||||||||
| WBInteraction000242982 | |||||||||
| WBInteraction000262705 | |||||||||
| WBInteraction000344749 | |||||||||
| WBInteraction000370008 | |||||||||
| WBInteraction000384784 | |||||||||
| WBInteraction000431711 | |||||||||
| WBInteraction000458671 | |||||||||
| Map_info | Map | X | Position | 10.4048 | |||||
| Positive | Positive_clone | R12H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029151 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
