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WormBase Tree Display for Gene: WBGene00027265

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Name Class

WBGene00027265SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-unc-39From_analysisInferred_from_orthology
Sequence_nameCBG04628
Molecular_nameCBG04628
CBG04628.1
CBP29289
Other_nameCBG_04628Accession_evidenceNDBHE601135
Public_nameCbr-unc-39
DB_infoDatabaseNDBlocus_tagCBG_04628
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-unc-39
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
AlleleWBVar00136276
WBVar00136277
WBVar00136272
WBVar00136278
WBVar00136273
WBVar00136279
WBVar00136274
WBVar00136275
RNASeq_FPKMWBls:00000020.312364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.10213From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.34876From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.64527From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.404754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.876757From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.927787From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000317.8329From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
28.4579From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
39.0829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
15.8519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
24.2559From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000436.3188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
38.3363From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
40.3539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
33.2232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
37.812From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
38.0825From_analysisRNASeq.briggsae.WBls:0000004.control_mean
42.7044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:00000240.294864From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
0.811207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
0.851988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
1.24236From_analysisRNASeq.briggsae.WBls:0000024.control_median
1.31296From_analysisRNASeq.briggsae.WBls:0000024.control_mean
1.63273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
1.95591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
2.41858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
4.19535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
2.28449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
2.29608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
2.89722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270.105016From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.249181From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.834629From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.14969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.581967From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.85466From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.914753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.401342From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.32154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.358113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0.522504From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.557039From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.686895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.861607From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000410.446891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.635684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.682223From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.719334From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.802985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.843331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.800744From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.823158From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.886116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.18946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.099475From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.156538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.340837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.061207From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.103298From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.122413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.686895From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.18988From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.827269From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.46356From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130883
OrthologWBGene00006775Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162675Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00119474Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00071518Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g714Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6220Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12807Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2682Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11984Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25814Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14043Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14946Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g8396Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4601Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00188.g6582Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-39Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19894Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00004.g250Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22366Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_22367Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23480Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23481Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017520Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_017521Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00345Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5854Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50361400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00220783Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g16510Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00071517Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00242653Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258871Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285982Trichuris murisFrom_analysisWormBase-Compara
WBGene00296736Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00028594Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028988Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028989Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041666Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans unc-39. In C. elegans, unc-39 is involved in several processes, including egg-laying behavior; generation of neurons; and regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04628
Corresponding_CDS_historyCBG04628:bp194
Corresponding_transcriptCBG04628.1
Other_sequenceAcan_isotig06578
Dviv_isotig15575
Dviv_isotig15576
Acan_isotig06577
Oden_isotig18067
Tcir_isotig25512
JI463737.1
Oden_isotig18066
JI211494.1
Experimental_infoExpr_patternExpr1068111
Microarray_resultsGPL8303_CB6_WBGene00027265_A
GPL8303_CB6_WBGene00027265_B
GPL14143_CBG04628_473-532_0.742_52_C
GPL14143_CBG04628_705-764_0.680_78_B
GPL14143_CBG04628_787-846_0.896_6_A
MethodGene