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WormBase Tree Display for Gene: WBGene00028989

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Name Class

WBGene00028989SMapS_parentSequencecb25.fpc0156
IdentityVersion2
NameCGC_nameCbr-ceh-34From_analysisInferred_from_orthology
Sequence_nameCBG06765
Molecular_nameCBG06765a
CBG06765a.1
CBP07432
CBG06765b
CBP44447
CBG06765b.1
CBG06765b.2
Other_nameCBG_06765Accession_evidenceNDBHE601320
Public_nameCbr-ceh-34
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ceh-34
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classceh
Allele (13)
RNASeq_FPKMWBls:00000022.33297From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
6.6487From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.32002From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.2931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.67735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.49868From_analysisRNASeq.briggsae.WBls:0000002.control_median
5.65586From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000312.4994From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
17.4305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
7.56841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
10.3155From_analysisRNASeq.briggsae.WBls:0000003.control_mean
5.94761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000467.4334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
68.1118From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
68.7902From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
59.1273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
69.2304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
69.9927From_analysisRNASeq.briggsae.WBls:0000004.control_mean
85.382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002712.0963From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.57686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.52736From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.73351From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.4035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.901From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.96543From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003514.3927From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.60752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
6.07305From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.29151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.69791From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.10431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.28887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.888151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.915956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.920718From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.925481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.25688From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.29792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.6117From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.95097From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.30081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.37753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.55563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.68613From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.09147From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.22451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.55906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.95973From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.15799From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.32772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.933From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.29151From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.7324From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.11956From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00132452
Ortholog (26)
ParalogWBGene00027265Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028594Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028988Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041666Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans ceh-34. In C. elegans, ceh-34 is involved in mesodermal cell fate specification; positive regulation of apoptotic process involved in development; and regulation of DNA-templated transcription.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06765a
CBG06765b
Corresponding_CDS_historyCBG06765:bp194
Corresponding_transcriptCBG06765a.1
CBG06765b.1
CBG06765b.2
Other_sequence (21)
Experimental_infoExpr_patternExpr1054546
Microarray_resultsGPL8303_CB6_WBGene00028989_A
GPL8303_CB6_WBGene00028989_B
GPL8303_CB6_WBGene00028989_C
GPL8303_CB6_WBGene00028989_D
GPL8303_CB6_WBGene00028989_E
GPL14143_CBG06765_43-102_0.906_8_C
GPL14143_CBG06765_348-407_0.904_9_A
GPL14143_CBG06765_449-508_0.925_2_B
MethodGene