WormBase Tree Display for Gene: WBGene00022127
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| WBGene00022127 | SMap | S_parent | Sequence | Y71F9B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | yop-1 | Person_evidence | WBPerson1836 | |||||
| WBPerson3188 | |||||||||
| Sequence_name | Y71F9B.3 | ||||||||
| Molecular_name | Y71F9B.3 | ||||||||
| Y71F9B.3.1 | |||||||||
| CE24624 | |||||||||
| Other_name | CELE_Y71F9B.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | yop-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Aug 2007 11:41:22 | WBPerson2970 | Name_change | CGC_name | yop-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | yop | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00002669 | ||||||||
| WBStrain00037666 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094554 | ||||||||
| 00094555 | |||||||||
| 00094556 | |||||||||
| 00094557 | |||||||||
| 00094558 | |||||||||
| 00094559 | |||||||||
| Contained_in_operon | CEOP1056 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00011401 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012180 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015518 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018930 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020562 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022452 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Located in cortical endoplasmic reticulum. Expressed in head and tail. Human ortholog(s) of this gene implicated in retinitis pigmentosa 77. Is an ortholog of human REEP5 (receptor accessory protein 5) and REEP6 (receptor accessory protein 6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080350 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30078) | ||||
| Molecular_info | Corresponding_CDS | Y71F9B.3 | |||||||
| Corresponding_transcript | Y71F9B.3.1 | ||||||||
| Other_sequence (101) | |||||||||
| Associated_feature | WBsf982963 | ||||||||
| WBsf217335 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037781 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00058180 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114780 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00087739 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117117 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram407 | ||||||||
| Expr7108 | |||||||||
| Expr9464 | |||||||||
| Expr13055 | |||||||||
| Expr1019266 | |||||||||
| Expr1039740 | |||||||||
| Expr1161599 | |||||||||
| Expr2018120 | |||||||||
| Expr2036257 | |||||||||
| Drives_construct | WBCnstr00003211 | ||||||||
| WBCnstr00038462 | |||||||||
| Construct_product | WBCnstr00000914 | ||||||||
| WBCnstr00014029 | |||||||||
| WBCnstr00038462 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (159) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | I | Position | -7.28014 | Error | 0.007421 | |||
| Positive | Positive_clone | Y71F9B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030808 | ||||||||
| WBPaper00031805 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059721 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
