WormBase Tree Display for Gene: WBGene00021922
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| WBGene00021922 | SMap | S_parent | Sequence | Y55F3AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | atg-3 | Person_evidence | WBPerson649 | |||||
| Sequence_name | Y55F3AM.4 | ||||||||
| Molecular_name | Y55F3AM.4a | ||||||||
| Y55F3AM.4a.1 | |||||||||
| CE25486 | |||||||||
| Y55F3AM.4b | |||||||||
| CE48976 | |||||||||
| Y55F3AM.4b.1 | |||||||||
| Other_name | CELE_Y55F3AM.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | atg-3 | ||||||||
| DB_info | Database | AceView | gene | 4B765 | |||||
| WormQTL | gene | WBGene00021922 | |||||||
| WormFlux | gene | WBGene00021922 | |||||||
| NDB | locus_tag | CELE_Y55F3AM.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021922|UniProtKB=Q9N369 | |||||||
| family | PTHR12866 | ||||||||
| NCBI | gene | 176921 | |||||||
| RefSeq | protein | NM_001380030.1 | |||||||
| NM_067623.7 | |||||||||
| TrEMBL | UniProtAcc | U4PRD2 | |||||||
| Q9N369 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N369 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Feb 2008 11:29:00 | WBPerson2970 | Name_change | CGC_name | atg-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atg | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00002372 | ||||||||
| WBStrain00008597 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00008427 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | atg-3 encodes an ortholog of the autophagic budding yeast protein Atg3p,and of human ATG3 (OMIM:609606); ATG-3 is expressed in larval and adultpharynx and body wall muscle, and in adult reproductive system, vulvalmuscle, spermetheca, and seam cells; ATG-3 has no obvious phenotype inmass RNAi assays. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00031006 | |||||||||
| WBPaper00031504 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 24 Feb 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable Atg8-family ligase activity. Involved in macroautophagy. Predicted to be located in cytosol and phagophore assembly site. Is an ortholog of human ATG3 (autophagy related 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55F3AM.4a | |||||||
| Y55F3AM.4b | |||||||||
| Corresponding_transcript | Y55F3AM.4a.1 | ||||||||
| Y55F3AM.4b.1 | |||||||||
| Other_sequence (58) | |||||||||
| Associated_feature | WBsf659903 | ||||||||
| WBsf227905 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Chronogram628 | ||||||||
| Expr7065 | |||||||||
| Expr1016290 | |||||||||
| Expr1039635 | |||||||||
| Expr1160964 | |||||||||
| Expr2009491 | |||||||||
| Expr2027728 | |||||||||
| Drives_construct | WBCnstr00003022 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | IV | Position | -22.7201 | Error | 0.016894 | |||
| Positive | Positive_clone | Y55F3AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
