WormBase Tree Display for Gene: WBGene00021856
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| WBGene00021856 | SMap | S_parent | Sequence | Y54F10BM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | ppm-1.D | Laboratory_evidence | GNW | |||||
| Sequence_name | Y54F10BM.1 | ||||||||
| Molecular_name | Y54F10BM.1 | ||||||||
| Y54F10BM.1.1 | |||||||||
| CE33881 | |||||||||
| Other_name | CELE_Y54F10BM.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ppm-1.D | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-1 | ||||
| 3 | 10 Nov 2009 13:30:43 | WBPerson1983 | Name_change | CGC_name | fbxa-1 name assignment moved to Y54F10BM.10 | ||||
| 4 | 24 May 2018 17:10:07 | WBPerson1983 | Name_change | CGC_name | ppm-1.D | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ppm | ||||||||
| Allele (293) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089054 | ||||||||
| 00089055 | |||||||||
| 00089056 | |||||||||
| 00089057 | |||||||||
| 00089058 | |||||||||
| 00089059 | |||||||||
| 00089060 | |||||||||
| 00089061 | |||||||||
| 00126064 | |||||||||
| 00126065 | |||||||||
| Contained_in_operon | CEOP3075 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00001412 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006460 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009354 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011953 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016580 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018362 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022832 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006524 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable mitogen-activated protein kinase binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in negative regulation of gene expression, epigenetic. Predicted to be located in cytosol and nucleus. Expressed in distal tip cell and germline blastomere. Human ortholog(s) of this gene implicated in breast cancer and pre-malignant neoplasm. Is an ortholog of human PPM1D (protein phosphatase, Mg2+/Mn2+ dependent 1D). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060071 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9277) | ||||
| DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9277) | ||||||
| Molecular_info | Corresponding_CDS | Y54F10BM.1 | |||||||
| Corresponding_CDS_history | Y54F10BM.1:wp98 | ||||||||
| Corresponding_transcript | Y54F10BM.1.1 | ||||||||
| Other_sequence | BXC05235_1 | ||||||||
| CGC00313_1 | |||||||||
| MCC03340_1 | |||||||||
| JI164664.1 | |||||||||
| MC04220 | |||||||||
| CGC01514_1 | |||||||||
| Associated_feature | WBsf644977 | ||||||||
| WBsf658666 | |||||||||
| WBsf658667 | |||||||||
| WBsf991496 | |||||||||
| WBsf1014391 | |||||||||
| WBsf1014392 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057410 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr16099 | ||||||||
| Expr16100 | |||||||||
| Expr1022506 | |||||||||
| Expr1039598 | |||||||||
| Expr1160840 | |||||||||
| Expr2007916 | |||||||||
| Expr2026158 | |||||||||
| Drives_construct | WBCnstr00042760 | ||||||||
| Regulate_expr_cluster | WBPaper00062498:PPM-1.D_interacting | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | III | Position | -14.7488 | |||||
| Positive | Positive_clone | Y54F10BM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062498 | |||||||||
| Remark | [091110 pad] fbxa-1 was incorrectly attached to this gene because of a typo in sequence naming. This assignment should have been to Y54F10BM.10. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
