WormBase Tree Display for Gene: WBGene00011953
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| WBGene00011953 | SMap | S_parent | Sequence | T23F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ppm-2 | Person_evidence | WBPerson4866 | |||||
| Sequence_name | T23F11.1 | ||||||||
| Molecular_name | T23F11.1 | ||||||||
| T23F11.1.1 | |||||||||
| CE24009 | |||||||||
| Other_name | CELE_T23F11.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ppm-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Jun 2012 17:01:34 | WBPerson2970 | Name_change | CGC_name | ppm-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ppm | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00037117 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00001412 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006460 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009354 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018362 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022832 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016580 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021856 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006524 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enables ubiquitin protein ligase binding activity. Involved in negative regulation of axon extension and positive regulation of synapse assembly. Located in presynaptic active zone. Expressed in mechanosensory neurons; motor neurons; muscle cell; nerve ring neurons; and pharynx. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23F11.1 | |||||||
| Corresponding_transcript | T23F11.1.1 | ||||||||
| Other_sequence (55) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019083 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035867 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00068039 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000870 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005055 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053939 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11790 | ||||||||
| Expr11791 | |||||||||
| Expr1025135 | |||||||||
| Expr1035277 | |||||||||
| Expr1157484 | |||||||||
| Expr2015020 | |||||||||
| Expr2033255 | |||||||||
| Drives_construct | WBCnstr00019428 | ||||||||
| WBCnstr00030256 | |||||||||
| Construct_product | WBCnstr00019391 | ||||||||
| WBCnstr00030256 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (98) | |||||||||
| Map_info | Map | III | Position | -2.95174 | |||||
| Positive | Positive_clone | T23F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00023684 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045251 | |||||||||
| WBPaper00047233 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00052451 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
