WormBase Tree Display for Gene: WBGene00021661
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| WBGene00021661 | SMap | S_parent | Sequence | Y48G1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mbtr-1 | Person_evidence | WBPerson2453 | |||||
| WBPerson268 | |||||||||
| Sequence_name | Y48G1A.6 | ||||||||
| Molecular_name | Y48G1A.6a | ||||||||
| Y48G1A.6a.1 | |||||||||
| CE41949 | |||||||||
| Y48G1A.6b | |||||||||
| CE41950 | |||||||||
| Y48G1A.6b.1 | |||||||||
| Other_name | Y48G1A.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y48G1A.g | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y48G1A.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mbtr-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00021661 | |||||
| WormFlux | gene | WBGene00021661 | |||||||
| NDB | locus_tag | CELE_Y48G1A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021661|UniProtKB=A0SQM0 | |||||||
| family | PTHR12247 | ||||||||
| NCBI | gene | 171624 | |||||||
| RefSeq | protein | NM_001129071.3 | |||||||
| NM_001129070.2 | |||||||||
| SwissProt | UniProtAcc | A0SQM0 | |||||||
| UniProt_GCRP | UniProtAcc | A0SQM0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Sep 2007 16:17:43 | WBPerson2970 | Name_change | CGC_name | mbtr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mbtr | ||||||||
| Allele (99) | |||||||||
| Strain | WBStrain00027528 | ||||||||
| WBStrain00036923 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004239 | ||||||||
| 00004240 | |||||||||
| 00004241 | |||||||||
| 00004242 | |||||||||
| 00125932 | |||||||||
| 00125933 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00003041 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015429 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019341 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | mbtr-1 encodes a protein with four malignant brain tumor (MBT) repeats; MBTR-1 is orthologous to Drosophila L(3)MBT and human L3MBTL (OMIM:608802) and SFMBT1 (RU1; OMIM:607319), and is paralogous to LIN-61; loss of mbtr-1 function via RNAi or mutation results in no obvious abnormalities; unlike lin-61, mbtr-1 does not appear to function as a class B synMuv gene or exhibit other pleiotropies, such as RNAi hypersensitivity or misregulation of transgene expression, associated with class B synMuv genes. | Paper_evidence | WBPaper00029251 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable chromatin binding activity and methylated histone binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of human L3MBTL2 (L3MBTL histone methyl-lysine binding protein 2) and MBTD1 (mbt domain containing 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G1A.6a | |||||||
| Y48G1A.6b | |||||||||
| Corresponding_CDS_history | Y48G1A.6:wp185 | ||||||||
| Corresponding_transcript | Y48G1A.6a.1 | ||||||||
| Y48G1A.6b.1 | |||||||||
| Other_sequence | MI07116 | ||||||||
| JI251871.1 | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004677 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037264 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004678 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116622 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062440 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007423 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004676 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056938 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000458 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028464 | ||||||||
| Expr1039483 | |||||||||
| Expr1160384 | |||||||||
| Expr2013441 | |||||||||
| Expr2031675 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction | WBInteraction000387924 | ||||||||
| WBInteraction000388308 | |||||||||
| WBInteraction000501280 | |||||||||
| WBInteraction000501283 | |||||||||
| WBInteraction000501287 | |||||||||
| WBInteraction000501288 | |||||||||
| WBInteraction000527437 | |||||||||
| Map_info | Map | I | Position | -19.0676 | Error | 0.002375 | |||
| Positive | Positive_clone | Y48G1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029251 | ||||||||
| WBPaper00038257 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
