WormBase Tree Display for Gene: WBGene00018967
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| WBGene00018967 | SMap | S_parent | Sequence | F56D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddx-15 | Person_evidence | WBPerson6799 | |||||
| Sequence_name | F56D2.6 | ||||||||
| Molecular_name | F56D2.6a | ||||||||
| F56D2.6a.1 | |||||||||
| CE01334 | |||||||||
| F56D2.6b | |||||||||
| CE32900 | |||||||||
| F56D2.6b.1 | |||||||||
| Other_name | CELE_F56D2.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ddx-15 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Jan 2014 14:35:58 | WBPerson2970 | Name_change | CGC_name | ddx-15 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddx | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00022234 | ||||||||
| WBStrain00037222 | |||||||||
| WBStrain00022233 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00003389 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003392 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003393 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004355 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009922 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015525 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022433 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022056 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020263 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021365 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The F56D2.6 gene encodes a DEAH helicase orthologous to the Drosophila CG11107, the human DDX15, and the S. cerevisiae PRP43 proteins. | Paper_evidence | WBPaper00004587 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is an ortholog of human DHX15 (DEAH-box helicase 15). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56D2.6a | |||||||
| F56D2.6b | |||||||||
| Corresponding_CDS_history | F56D2.6b:wp91 | ||||||||
| Corresponding_transcript | F56D2.6a.1 | ||||||||
| F56D2.6b.1 | |||||||||
| Other_sequence (86) | |||||||||
| Associated_feature | WBsf651057 | ||||||||
| WBsf651058 | |||||||||
| WBsf666914 | |||||||||
| WBsf226700 | |||||||||
| WBsf226701 | |||||||||
| WBsf226702 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1019790 | ||||||||
| Expr1038187 | |||||||||
| Expr1152455 | |||||||||
| Expr2010833 | |||||||||
| Expr2029071 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (398) | |||||||||
| Map_info | Map | III | Position | -1.52471 | |||||
| Positive | Positive_clone | F56D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032961 | ||||||||
| WBPaper00034521 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041854 | |||||||||
| WBPaper00042633 | |||||||||
| WBPaper00048220 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00052146 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
