WormBase Tree Display for Gene: WBGene00018215
expand all nodes | collapse all nodes | view schema
WBGene00018215 | SMap | S_parent | Sequence | F39H12 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | igcm | ||||||
Allele (72) | |||||||
Strain | WBStrain00001850 | ||||||
WBStrain00031583 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00097045 | ||||||
00097046 | |||||||
00097047 | |||||||
00097048 | |||||||
00097049 | |||||||
Ortholog (34) | |||||||
Paralog | WBGene00004729 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00006365 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00007750 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00020130 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Concise_description | igcm-1 encodes a protein containing immunoglobulin and fibronectin repeats; igcm-1 promoter::gfp fusions are expressed in the labial neurons, including the sheath and socket cells, as well as in the pharynx and lateral hypodermis. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 25 Mar 2008 00:00:00 | ||||||
Automated_description | Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in cell-cell junction. Expressed in several structures, including interfacial epithelial cell; intestine; labial sensillum; neurons; and pharynx. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F39H12.4 | |||||
Corresponding_transcript | F39H12.4.1 | ||||||
Other_sequence | Acan_isotig21256 | ||||||
CR11677 | |||||||
CR11676 | |||||||
CR05184 | |||||||
CRC01202 | |||||||
Associated_feature (15) | |||||||
Experimental_info | RNAi_result | WBRNAi00046801 | Inferred_automatically | RNAi_primary | |||
WBRNAi00031998 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1752 | ||||||
Expr1765 | |||||||
Expr6004 | |||||||
Expr8851 | |||||||
Expr13053 | |||||||
Expr1011700 | |||||||
Expr1037843 | |||||||
Expr1150676 | |||||||
Expr2012703 | |||||||
Expr2030939 | |||||||
Drives_construct | WBCnstr00001449 | ||||||
WBCnstr00001450 | |||||||
WBCnstr00001451 | |||||||
WBCnstr00002642 | |||||||
WBCnstr00013561 | |||||||
WBCnstr00026693 | |||||||
WBCnstr00038452 | |||||||
Construct_product | WBCnstr00026693 | ||||||
WBCnstr00038452 | |||||||
Microarray_results (16) | |||||||
Expression_cluster (239) | |||||||
Interaction (11) | |||||||
Map_info | Map | X | Position | -19.4791 | Error | 0.005133 | |
Positive | Positive_clone | F39H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5067 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00036330 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |