WormBase Tree Display for Gene: WBGene00018169
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WBGene00018169 | SMap | S_parent | Sequence | F38A5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspb-2 | Person_evidence | WBPerson655 | |||||
Sequence_name | F38A5.12 | ||||||||
Molecular_name | F38A5.12 | ||||||||
F38A5.12.1 | |||||||||
CE10048 | |||||||||
Other_name | CELE_F38A5.12 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nspb-2 | ||||||||
DB_info | Database | AceView | gene | 4H355 | |||||
WormQTL | gene | WBGene00018169 | |||||||
WormFlux | gene | WBGene00018169 | |||||||
NDB | locus_tag | CELE_F38A5.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018169|UniProtKB=Q94214 | |||||||
family | PTHR31887 | ||||||||
NCBI | gene | 185448 | |||||||
RefSeq | protein | NM_068607.3 | |||||||
TREEFAM | TREEFAM_ID | TF319426 | |||||||
TrEMBL | UniProtAcc | Q94214 | |||||||
UniProt_GCRP | UniProtAcc | Q94214 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 06 May 2005 10:44:15 | WBPerson2970 | Name_change | CGC_name | nspb-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspb | ||||||||
Allele | WBVar00427245 | ||||||||
WBVar01499395 | |||||||||
WBVar01499396 | |||||||||
WBVar02120505 | |||||||||
WBVar01499633 | |||||||||
WBVar01500245 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (15) | |||||||||
Paralog | WBGene00018162 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018166 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00018167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WBGene00018170 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019152 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
Structured_description | Automated_description | Enriched in pharynx based on RNA-seq studies. Is affected by several genes including daf-2; hsf-1; and rrf-3 based on quantitative PCR; microarray; tiling array; and RNA-seq studies. Is affected by nine chemicals including Ethanol; multi-walled carbon nanotube; and Cry5B based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1459) and Protein of unknown function DUF1459. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F38A5.12 | |||||||
Corresponding_transcript | F38A5.12.1 | ||||||||
Associated_feature | WBsf228430 | ||||||||
Experimental_info | RNAi_result | WBRNAi00008764 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00025434 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069426 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085531 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014533 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014526 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014524 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046674 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1150544 | ||||||||
Expr2014456 | |||||||||
Expr2032697 | |||||||||
Drives_construct | WBCnstr00026728 | ||||||||
Construct_product | WBCnstr00026728 | ||||||||
Microarray_results | SMD_F38A5.12 | ||||||||
A_12_P107945 | |||||||||
GPL19516_CGZ0020364 | |||||||||
GPL3518_CE10048 | |||||||||
GPL8304_CE_WBGene00018169_A | |||||||||
GPL8304_CE_WBGene00018169_B | |||||||||
GPL8673_F38A5_12P00039 | |||||||||
GPL8673_F38A5_12P00113 | |||||||||
GPL8673_F38A5_5P00039 | |||||||||
GPL8673_F38A5_5P00113 | |||||||||
Expression_cluster (73) | |||||||||
Interaction | WBInteraction000343746 | ||||||||
WBInteraction000376443 | |||||||||
Map_info | Map | IV | Position | 3.21174 | Error | 0.000349 | |||
Positive | Positive_clone | F38A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |