WormBase Tree Display for Gene: WBGene00016289
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WBGene00016289 | SMap | S_parent | Sequence | C31H1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lntl-1 | Person_evidence | WBPerson190 | |||
WBPerson268 | |||||||
Sequence_name | C31H1.6 | ||||||
Molecular_name | C31H1.6a | ||||||
C31H1.6a.1 | |||||||
CE31326 | |||||||
C31H1.6b | |||||||
CE32600 | |||||||
C31H1.6c | |||||||
CE49172 | |||||||
C31H1.6b.1 | |||||||
C31H1.6c.1 | |||||||
C31H1.6d | |||||||
Other_name | CELE_C31H1.6 | Accession_evidence | NDB | BX284604 | |||
Public_name | lntl-1 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lntl | ||||||
Allele (75) | |||||||
Strain | WBStrain00032238 | ||||||
WBStrain00037041 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00021786 | ||||||
00021787 | |||||||
Ortholog (32) | |||||||
Paralog | WBGene00003010 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | lntl-1 encodes a novel protein, conserved amongst nematodes; in C. elegans, LNTL-1 is most closely related to LIN-24, a protein containing a domain found in bacterial toxins such as the Bacillus sphaericus Mtx3 mosquitocidal toxin; animals containing a loss-of-function lntl-1 mutation, as well as animals doubly mutant for lntl-1 and lin-24, appear wild type. | Paper_evidence | WBPaper00031858 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Jun 2008 00:00:00 | ||||||
Automated_description | Enriched in several structures, including anterior ganglion; arcade cell; excretory system; muscle cell; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and rrf-3 based on microarray; RNA-seq; and proteomic studies. Is affected by twelve chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info (4) | |||||||
Experimental_info | RNAi_result | WBRNAi00011450 | Inferred_automatically | RNAi_primary | |||
WBRNAi00029391 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041626 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1025089 | ||||||
Expr1036966 | |||||||
Expr1145649 | |||||||
Expr2013242 | |||||||
Expr2031473 | |||||||
Drives_construct | WBCnstr00028187 | ||||||
Construct_product | WBCnstr00028187 | ||||||
Microarray_results (25) | |||||||
Expression_cluster (249) | |||||||
Interaction (16) | |||||||
Map_info | Map | IV | Position | 2.40752 | Error | 0.003203 | |
Positive | Positive_clone | C31H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031858 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |