WormBase Tree Display for Gene: WBGene00016289
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WBGene00016289 | SMap | S_parent | Sequence | C31H1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lntl-1 | Person_evidence | WBPerson190 | |||||
WBPerson268 | |||||||||
Sequence_name | C31H1.6 | ||||||||
Molecular_name (10) | |||||||||
Other_name | CELE_C31H1.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | lntl-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 05 Feb 2007 15:10:43 | WBPerson2970 | Name_change | CGC_name | lntl-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lntl | ||||||||
Allele (75) | |||||||||
Strain | WBStrain00032238 | ||||||||
WBStrain00037041 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00021786 | ||||||||
00021787 | |||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00003010 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | lntl-1 encodes a novel protein, conserved amongst nematodes; in C. elegans, LNTL-1 is most closely related to LIN-24, a protein containing a domain found in bacterial toxins such as the Bacillus sphaericus Mtx3 mosquitocidal toxin; animals containing a loss-of-function lntl-1 mutation, as well as animals doubly mutant for lntl-1 and lin-24, appear wild type. | Paper_evidence | WBPaper00031858 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Jun 2008 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including anterior ganglion; arcade cell; excretory system; muscle cell; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and rrf-3 based on microarray; RNA-seq; and proteomic studies. Is affected by twelve chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00011450 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029391 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041626 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025089 | ||||||||
Expr1036966 | |||||||||
Expr1145649 | |||||||||
Expr2013242 | |||||||||
Expr2031473 | |||||||||
Drives_construct | WBCnstr00028187 | ||||||||
Construct_product | WBCnstr00028187 | ||||||||
Microarray_results (25) | |||||||||
Expression_cluster (249) | |||||||||
Interaction (16) | |||||||||
Map_info | Map | IV | Position | 2.40752 | Error | 0.003203 | |||
Positive | Positive_clone | C31H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031858 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |