WormBase Tree Display for Gene: WBGene00013350
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| WBGene00013350 | SMap | S_parent | Sequence | Y59A8B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | slr-2 | Person_evidence | WBPerson171 | |||||
| Sequence_name | Y59A8B.13 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | ztf-24 | Person_evidence | WBPerson1997 | ||||||
| Y59A8B.w | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y59A8B.x | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y59A8B.y | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y59A8B.13 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | slr-2 | ||||||||
| DB_info | Database | AceView | gene | 5S569 | |||||
| WormQTL | gene | WBGene00013350 | |||||||
| WormFlux | gene | WBGene00013350 | |||||||
| NDB | locus_tag | CELE_Y59A8B.13 | |||||||
| NCBI | gene | 190396 | |||||||
| RefSeq | protein | NM_001269847.3 | |||||||
| NM_001269846.1 | |||||||||
| NM_001269845.1 | |||||||||
| NM_001269844.3 | |||||||||
| NM_001269843.4 | |||||||||
| NM_001269848.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF350824 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Apr 2008 09:32:24 | WBPerson2970 | Name_change | CGC_name | ztf-24 | ||||
| 3 | 23 May 2008 16:17:43 | WBPerson2970 | Name_change | CGC_name | slr-2 | ||||
| Other_name | ztf-24 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slr | ||||||||
| Allele (201) | |||||||||
| Strain | WBStrain00037765 | ||||||||
| WBStrain00055562 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP5586 | ||||||||
| CEOP5587 | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00003012 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00003044 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003045 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003046 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010264 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018740 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018833 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00304808 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Expressed in intestine. Is predicted to encode a protein with the following domains: Zinc finger C2H2 superfamily and Zinc finger C2H2-type. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y59A8B.13a | |||||||
| Y59A8B.13b | |||||||||
| Y59A8B.13c | |||||||||
| Y59A8B.13d | |||||||||
| Y59A8B.13e | |||||||||
| Y59A8B.13f | |||||||||
| Corresponding_CDS_history | Y59A8B.13:wp174 | ||||||||
| Y59A8B.13:wp188 | |||||||||
| Y59A8B.13:wp195 | |||||||||
| Y59A8B.13:wp207 | |||||||||
| Corresponding_transcript | Y59A8B.13a.1 | ||||||||
| Y59A8B.13b.1 | |||||||||
| Y59A8B.13c.1 | |||||||||
| Y59A8B.13d.1 | |||||||||
| Y59A8B.13e.1 | |||||||||
| Y59A8B.13f.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf647671 | ||||||||
| WBsf662193 | |||||||||
| WBsf978609 | |||||||||
| WBsf1002818 | |||||||||
| WBsf1021403 | |||||||||
| WBsf1021404 | |||||||||
| Transcription_factor | WBTranscriptionFactor000092 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057746 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr8089 | ||||||||
| Expr1028511 | |||||||||
| Expr1035962 | |||||||||
| Expr1161169 | |||||||||
| Expr2015886 | |||||||||
| Expr2034119 | |||||||||
| Drives_construct | WBCnstr00007214 | ||||||||
| WBCnstr00013104 | |||||||||
| Construct_product | WBCnstr00021931 | ||||||||
| Regulate_expr_cluster | WBPaper00031832:slr-2_regulated | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | V | Position | 14.0027 | Error | 0.044458 | |||
| Positive | Positive_clone | Y59A8B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
