WormBase Tree Display for Gene: WBGene00011068
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WBGene00011068 | SMap | S_parent | Sequence | R06F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | set-14 | Person_evidence | WBPerson1730 | |||||
WBPerson268 | |||||||||
WBPerson632 | |||||||||
Sequence_name | R06F6.4 | ||||||||
Molecular_name | R06F6.4 | ||||||||
R06F6.4.1 | |||||||||
CE16303 | |||||||||
Other_name | CELE_R06F6.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | set-14 | ||||||||
DB_info | Database | AceView | gene | 2L84 | |||||
WormQTL | gene | WBGene00011068 | |||||||
WormFlux | gene | WBGene00011068 | |||||||
NDB | locus_tag | CELE_R06F6.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011068|UniProtKB=Q09415 | |||||||
family | PTHR12197 | ||||||||
NCBI | gene | 174662 | |||||||
RefSeq | protein | NM_063922.7 | |||||||
SwissProt | UniProtAcc | Q09415 | |||||||
TREEFAM | TREEFAM_ID | TF106487 | |||||||
UniProt_GCRP | UniProtAcc | Q09415 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-14 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | set | ||||||||
Allele (38) | |||||||||
Strain | WBStrain00051883 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00053753 | ||||||||
00053754 | |||||||||
00053755 | |||||||||
00053756 | |||||||||
00053757 | |||||||||
Contained_in_operon | CEOP2504 | ||||||||
Ortholog (35) | |||||||||
Paralog | WBGene00009370 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00022499 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00007403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00044070 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | set-14 encodes a divergent ortholog of human SMYD1 (OMIM:606846), SMYD2 (OMIM:610663), and SYMD3 (OMIM:608783); SET-14 is paralogous to SET-10, SET-18, and SET-30; SET-14 has no obvious function in individual RNAi assays of vulval development, or in mass RNAi assays. | Paper_evidence | WBPaper00030864 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 08 Oct 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Expressed in hypodermis; intestine; and neurons. Is an ortholog of human SMYD1 (SET and MYND domain containing 1) and SMYD2 (SET and MYND domain containing 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R06F6.4 | |||||||
Corresponding_transcript | R06F6.4.1 | ||||||||
Other_sequence | CRC02938_1 | ||||||||
CR03307 | |||||||||
Associated_feature | WBsf223838 | ||||||||
WBsf223839 | |||||||||
Experimental_info | RNAi_result | WBRNAi00002284 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113449 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051396 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017491 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062331 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034668 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091481 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr14360 | ||||||||
Expr1011276 | |||||||||
Expr1034862 | |||||||||
Expr1155086 | |||||||||
Expr2015758 | |||||||||
Expr2033991 | |||||||||
Drives_construct | WBCnstr00030957 | ||||||||
Construct_product | WBCnstr00030957 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (100) | |||||||||
Interaction (13) | |||||||||
Map_info | Map | II | Position | 3.12713 | Error | 6.2e-05 | |||
Positive | Positive_clone | R06F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00030864 | ||||||||
WBPaper00036383 | |||||||||
WBPaper00038372 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065308 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |