WormBase Tree Display for Gene: WBGene00010670
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WBGene00010670 | SMap | S_parent | Sequence | K08E4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | tmed-1 | Person_evidence | WBPerson451 | |||
Sequence_name | K08E4.6 | ||||||
Molecular_name | K08E4.6 | ||||||
K08E4.6.1 | |||||||
CE06146 | |||||||
Other_name | CELE_K08E4.6 | Accession_evidence | NDB | BX284604 | |||
Public_name | tmed-1 | ||||||
DB_info | Database | AceView | gene | 4M842 | |||
WormQTL | gene | WBGene00010670 | |||||
WormFlux | gene | WBGene00010670 | |||||
NDB | locus_tag | CELE_K08E4.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00010670|UniProtKB=Q21336 | |||||
family | PTHR22811 | ||||||
NCBI | gene | 178145 | |||||
RefSeq | protein | NM_069887.6 | |||||
TrEMBL | UniProtAcc | Q21336 | |||||
UniProt_GCRP | UniProtAcc | Q21336 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tmed | ||||||
Allele (15) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00071304 | ||||||
00071305 | |||||||
00071306 | |||||||
00071307 | |||||||
00071308 | |||||||
00071309 | |||||||
00071310 | |||||||
00071311 | |||||||
00071312 | |||||||
00105770 | |||||||
Ortholog (44) | |||||||
Paralog | WBGene00004766 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00007743 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00009829 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00011606 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00013360 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00019003 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00022255 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Involved in IRE1-mediated unfolded protein response. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of human TMED1 (transmembrane p24 trafficking protein 1) and TMED5 (transmembrane p24 trafficking protein 5). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K08E4.6 | |||||
Corresponding_transcript | K08E4.6.1 | ||||||
Other_sequence (40) | |||||||
Associated_feature | WBsf652274 | ||||||
WBsf230958 | |||||||
WBsf230959 | |||||||
Experimental_info | RNAi_result (5) | ||||||
Expr_pattern | Expr1028245 | ||||||
Expr1034666 | |||||||
Expr1153996 | |||||||
Expr2004926 | |||||||
Expr2023148 | |||||||
Drives_construct | WBCnstr00031236 | ||||||
Construct_product | WBCnstr00031236 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (111) | |||||||
Interaction | WBInteraction000213627 | ||||||
WBInteraction000272407 | |||||||
WBInteraction000272672 | |||||||
WBInteraction000288417 | |||||||
WBInteraction000297288 | |||||||
WBInteraction000313543 | |||||||
WBInteraction000386883 | |||||||
WBInteraction000404109 | |||||||
WBInteraction000551622 | |||||||
WBInteraction000582351 | |||||||
Map_info | Map | IV | Position | 5.64825 | |||
Positive | Positive_clone | K08E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00055090 | |||||||
WBPaper00061547 | |||||||
WBPaper00065655 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |