WormBase Tree Display for Gene: WBGene00009968
expand all nodes | collapse all nodes | view schema
WBGene00009968 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | fig-1 | Person_evidence | WBPerson3410 | |||||
WBPerson3085 | |||||||||
WBPerson576 | |||||||||
Sequence_name | F53B7.5 | ||||||||
Molecular_name | F53B7.5a | ||||||||
F53B7.5a.1 | |||||||||
CE47474 | |||||||||
F53B7.5b | |||||||||
CE53054 | |||||||||
F53B7.5b.1 | |||||||||
Other_name | CELE_F53B7.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fig-1 | ||||||||
DB_info | Database | AceView | gene | 5L452 | |||||
WormQTL | gene | WBGene00009968 | |||||||
WormFlux | gene | WBGene00009968 | |||||||
NDB | locus_tag | CELE_F53B7.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009968|UniProtKB=G5EGB4 | |||||||
family | PTHR31507 | ||||||||
NCBI | gene | 179523 | |||||||
RefSeq | protein | NM_001129475.3 | |||||||
NM_001129474.4 | |||||||||
TREEFAM | TREEFAM_ID | TF315483 | |||||||
TrEMBL | UniProtAcc | G5EGB4 | |||||||
H9G2W3 | |||||||||
UniProt_GCRP | UniProtAcc | G5EGB4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 10 Sep 2008 16:37:04 | WBPerson2970 | Name_change | CGC_name | fig-1 | ||||
3 | 09 Jan 2012 12:38:37 | WBPerson4025 | Event | Split_into | WBGene00219325 | ||||
Split_into | WBGene00219325 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fig | ||||||||
Allele (157) | |||||||||
Possibly_affected_by | WBVar02157904 | ||||||||
Strain | WBStrain00052693 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00019912 | ||||||||
Ortholog (32) | |||||||||
Paralog (18) | |||||||||
Structured_description | Concise_description | fig-1 encodes a predicted extracellular protein containing conserved thrombospondin TSP1 domains; FIG-1 function is required cell nonautonomously for sensory organ function as measured by dye filling and behavioral assays; a fig-1::GFP promoter fusion is expressed in amphid and phasmid sheath glial cells from late embryogenesis through adulthood; as fig-1(RNAi) can produce defects at all stages of development and fig-1 mRNA is highly expressed, FIG-1 is likely to be a labile protein that plays a nonstructural role in regulating neuronal function. | Paper_evidence | WBPaper00032317 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 08 Dec 2009 00:00:00 | ||||||||
Automated_description | Predicted to be located in membrane. Expressed in amphid sheath cell and phasmid sheath cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F53B7.5a | |||||||
F53B7.5b | |||||||||
Corresponding_CDS_history | F53B7.5:wp173 | ||||||||
F53B7.5a:wp230 | |||||||||
F53B7.5b:wp270 | |||||||||
Corresponding_transcript | F53B7.5a.1 | ||||||||
F53B7.5b.1 | |||||||||
Other_sequence | ACC12564_1 | ||||||||
SS03471 | |||||||||
Oden_isotig17409 | |||||||||
Acan_isotig04140 | |||||||||
EX536206.1 | |||||||||
Associated_feature | WBsf668676 | ||||||||
WBsf669348 | |||||||||
WBsf1001240 | |||||||||
WBsf1001241 | |||||||||
WBsf1020387 | |||||||||
WBsf234477 | |||||||||
WBsf234478 | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | V | Position | 2.87711 | Error | 0.003354 | |||
Positive | Positive_clone | F53B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031789 | ||||||||
WBPaper00032317 | |||||||||
WBPaper00032771 | |||||||||
WBPaper00039427 | |||||||||
WBPaper00039849 | |||||||||
WBPaper00048088 | |||||||||
WBPaper00049809 | |||||||||
WBPaper00052744 | |||||||||
WBPaper00062520 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |